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Gene MGC87042TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
50 supporting clones for gene MGC87042 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK308991 corpus callosum .a 104 to 1299 1 to 1196   tiling clone,   1196/1196
(100 %)
2 diff
(99.9 %id)
AW796185 uterus .b 785 to 1302 11 to 531       521/542
(96 %)
30 diff
(94.5 %id)
AW877243.
matches multiple genes
pnet .b 459 to 711 54 to 309     also hits gene STEAP1 256/309
(82 %)
6 diff
(98.1 %id)
BC066301 Brain, hippocampus .b 104 to 1295 1 to 1192   tiling clone, available from MGC, AAA   1192/1192
(100 %)
4 diff
(99.7 %id)
BE183969 head_neck .b 1051 to 1275 227 to 3     Submitted on the opposite strand 225/242
(92 %)
0 diff
(100 %id)
BG182296   .a 170 to 850 116 to 795       680/796
(85 %)
5 diff
(99.4 %id)
BG186101   .b 908 to 1292 394 to 15   AAA Submitted on the opposite strand 380/380
(100 %)
3 diff
(99.3 %id)
BG201954   .a 170 to 809 159 to 784       626/843
(74 %)
43 diff
(94.9 %id)
DC329655 corpus callosum .a 104 to 653 1 to 550       550/550
(100 %)
0 diff
(100 %id)
BX506262   .a 32 to 692 1 to 661   tiling clone,   661/661
(100 %)
4 diff
(99.4 %id)
EL734169 mixed .b 201 to 869 1 to 667       667/667
(100 %)
4 diff
(99.5 %id)
DB538249 hippocampus .b 861 to 1295 1 to 435     Submitted on the opposite strand 435/435
(100 %)
1 diff
(99.8 %id)
DC355153   .a 85 to 554 1 to 470   tiling clone,   470/470
(100 %)
0 diff
(100 %id)
DC359836   .a 85 to 650 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
AA910638 pooled germ cell tumors .e 997 to 1364 372 to 3       370/372
(99 %)
0 diff
(100 %id)
AI656979 pooled germ cell tumors .e 879 to 1364 490 to 3       488/490
(99 %)
0 diff
(100 %id)
AI651530 pooled germ cell tumors .f 32 to 494 471 to 9       463/471
(98 %)
0 diff
(100 %id)
AW071597 pooled germ cell tumors .f 1 to 502 502 to 1 exact tiling clone,   502/502
(100 %)
3 diff
(99.5 %id)
AW129021 brain, tumor, 5 pooled (see description) .b 739 to 1298 560 to 3   tiling clone,   558/590
(94 %)
10 diff
(98.4 %id)
AW235249 pooled germ cell tumors .e 956 to 1364 414 to 3       412/419
(98 %)
0 diff
(100 %id)
AW198084 adenocarcinoma, Pancreas .b 980 to 1296 320 to 1       320/320
(100 %)
4 diff
(98.8 %id)
AW204859   .b 955 to 1297 360 to 18   AAA   343/343
(100 %)
2 diff
(99.5 %id)
AW474994 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 765 to 1292 528 to 1       528/528
(100 %)
1 diff
(99.9 %id)
BC027978 Cervix, carcinoma .e 5 to 1362 11 to 1368   tiling clone, available from MGC, AAA   1358/1358
(100 %)
0 diff
(100 %id)
BE548793 cervical carcinoma cell line, cervix .e 27 to 731 1 to 706   available from MGC,   706/706
(100 %)
19 diff
(97.4 %id)
BG762026 melanotic melanoma, high MDR (cell line), skin .a 80 to 949 1 to 881       863/961
(89 %)
16 diff
(98.4 %id)
BI912463 leukocyte .e 1 to 911 1 to 928 I13V tiling clone,   928/953
(97 %)
24 diff
(97.5 %id)
BI551229 brain, hippocampus .b 99 to 911 1 to 819       819/1003
(81 %)
23 diff
(97.8 %id)
BM811413 amelanotic melanoma, cell line, skin .b 411 to 1149 1 to 742   tiling clone,   742/1020
(72 %)
25 diff
(97.6 %id)
BM920324 pooled pancreas and spleen .d 1 to 850 2 to 854 L3D tiling clone,   853/1071
(79 %)
21 diff
(98.1 %id)
BQ014710 Chondrosarcoma, Left Pubic Bone .f 691 to 1351 679 to 19   tiling clone, AAA   661/661
(100 %)
0 diff
(100 %id)
BQ014856 Chondrosarcoma, Left Pubic Bone .b 1030 to 1292 282 to 19   AAA   264/273
(96 %)
1 diff
(99.7 %id)
BU188383 melanotic melanoma, skin .f 149 to 1054 1 to 910   tiling clone,   910/910
(100 %)
12 diff
(98.7 %id)
CX757709 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 108 to 820 30 to 742     Submitted on the opposite strand 713/742
(96 %)
16 diff
(97.9 %id)
TI_44171352   .b 101 to 911 89 to 905       817/1089
(75 %)
25 diff
(97.8 %id)
TI_57247554   .e 1 to 911 37 to 964 I13V     928/989
(93 %)
29 diff
(97.1 %id)
CB143042 Liver .a 67 to 632 1 to 566       566/566
(100 %)
5 diff
(99.2 %id)
CB160258 Liver .d 103 to 683 1 to 581   tiling clone,   581/581
(100 %)
0 diff
(100 %id)
DC428543   .a 65 to 646 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
NM_207342.2   .b 1 to 1298 1 to 1298 exact RefSeq,   1298/1298
(100 %)
0 diff
(100 %id)
NM_001164460.1   .a 1 to 1299 1 to 1299 exact RefSeq,   1299/1299
(100 %)
0 diff
(100 %id)
DC365749   .c 1 to 543 1 to 544 I7V E30K E34R T35D S36Q ... tiling clone,   544/544
(100 %)
8 diff
(98.6 %id)
TI_1948208763   .b 201 to 411 131 to 341   fully sequenced,   211/239
(88 %)
8 diff
(96.7 %id)
TI_1948208764   .b 381 to 915 686 to 148   fully sequenced,   539/686
(78 %)
2 diff
(99.8 %id)
TI_1948208933   .b 201 to 315 133 to 247   fully sequenced,   115/143
(80 %)
7 diff
(95.2 %id)
TI_1948208934   .b 254 to 915 813 to 147   fully sequenced,   667/813
(82 %)
8 diff
(99.1 %id)
TI_1948209102   .b 194 to 415 123 to 344   fully sequenced,   222/243
(91 %)
6 diff
(97.6 %id)
TI_1948209103   .b 385 to 915 679 to 146   fully sequenced,   534/679
(78 %)
7 diff
(99.0 %id)
TI_1948209271   .b 201 to 906 123 to 830   fully sequenced,   708/830
(85 %)
12 diff
(98.6 %id)
TI_1948209272   .b 637 to 915 427 to 148   fully sequenced,   280/427
(65 %)
0 diff
(100 %id)
TI_1948242654   .b 740 to 910 726 to 896   AAA   171/1428
(11 %)
11 diff
(99.3 %id)
TI_1948242655   .a 202 to 798 125 to 721       597/1496
(39 %)
69 diff
(95.4 %id)
DC392213 stomach .g 1 to 546 1 to 546 exact tiling clone,   546/546
(100 %)
0 diff
(100 %id)
DC403165 testis .a 134 to 615 1 to 483       483/483
(100 %)
1 diff
(99.8 %id)
TI_1948208764   .b 381 to 915 686 to 148   fully sequenced,   539/686
(78 %)
2 diff
(99.8 %id)
TI_1948208933   .b 201 to 315 133 to 247   fully sequenced,   115/143
(80 %)
7 diff
(95.2 %id)
TI_1948208934 SC_31005_2_G2 MGC87042.bAug10 915 147 SC_31005_2_G2     667 8
TI_1948209102 SC_31005_3_G2 MGC87042.bAug10 415 344 SC_31005_3_G2     222 6
TI_1948209103 SC_31005_3_G2 MGC87042.bAug10 915 146 SC_31005_3_G2     534 7
TI_1948209271 SC_31005_4_G2 MGC87042.bAug10 906 830 SC_31005_4_G2     708 12
TI_1948209272 SC_31005_4_G2 MGC87042.bAug10 915 148 SC_31005_4_G2     280 0
TI_1948242654 SC_31043_2_D4 MGC87042.bAug10 910 896 SC_31043_2_D4     171 11
TI_1948242655 SC_31043_2_D4__1 MGC87042.aAug10 798 721 SC_31043_2_D4__1     597 69
DC392213 STOMA2001170 MGC87042.gAug10 546 546 STOMA2001170     546 0
DC403165 TESTI4037065 MGC87042.aAug10 615 483 TESTI4037065     483 1
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C