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Gene CCDC77andB4GALNT3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
264 supporting clones for gene CCDC77andB4GALNT3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC298016   .i 63 to 636 1 to 574       574/574
(100 %)
0 diff
(100 %id)
AA758653   .b 2437 to 2933 502 to 4   tiling clone,   499/502
(99 %)
0 diff
(100 %id)
R45746   .b 2550 to 2823 1 to 262       262/262
(100 %)
24 diff
(90.9 %id)
T12192   .vj-u 1 to 164 164 to 1 D11E R12X S18G T41N N42Q ... tiling clone,   164/164
(100 %)
4 diff
(97.6 %id)
AA296601 uterus .vc-u 390 to 604 1 to 215       215/215
(100 %)
0 diff
(100 %id)
AA299607 uterus .b 3356 to 3671 1 to 316       316/316
(100 %)
6 diff
(98.2 %id)
AA312043   .vd 453 to 791 1 to 339 I4V tiling clone,   339/339
(100 %)
1 diff
(99.8 %id)
AA314683 colon .h 138 to 651 1 to 514       514/514
(100 %)
0 diff
(100 %id)
AA341190 Kidney .b 3358 to 3641 1 to 287       287/287
(100 %)
4 diff
(98.7 %id)
AB089940   .a 1 to 2997 1 to 2997 K411R tiling clone,   2997/2997
(100 %)
3 diff
(99.9 %id)
AJ710896 heart .b 3568 to 4096 547 to 18     Submitted on the opposite strand 530/547
(96 %)
0 diff
(100 %id)
AK027638   .f 109 to 2391 1 to 2283 exact available from FLJ,   2283/2283
(100 %)
3 diff
(99.9 %id)
AK093503 testis .c 24 to 1949 1 to 1926   tiling clone, available from FLJ,   1926/1926
(100 %)
1 diff
(100.0 %id)
AK097681 testis .a 1616 to 3438 1 to 1823   tiling clone, available from FLJ,   1823/1823
(100 %)
2 diff
(99.9 %id)
AK131277 tongue, tumor tissue .d 156 to 4590 1 to 4435 exact tiling clone, available from FLJ,   4435/4435
(100 %)
5 diff
(99.9 %id)
AK293165   .i 63 to 1670 1 to 1608 exact tiling clone,   1608/1608
(100 %)
0 diff
(100 %id)
AK308216 Spleen .h 46 to 1407 1 to 1362   tiling clone,   1362/1362
(100 %)
2 diff
(99.9 %id)
AK316029 caudate nucleus .e 1 to 1652 1 to 1652 exact tiling clone,   1652/1652
(100 %)
0 diff
(100 %id)
AW369804 breast .b 2596 to 2985 406 to 9   tiling clone,   398/406
(98 %)
0 diff
(100 %id)
AW375975 colon .b 3555 to 3772 1 to 219       219/230
(95 %)
7 diff
(97.0 %id)
AW376076 colon .b 3371 to 3772 9 to 409       401/420
(95 %)
5 diff
(98.9 %id)
AW945621 lung_normal .s 614 to 937 11 to 333   tiling clone,   323/333
(96 %)
6 diff
(98.2 %id)
AX748171   .c 24 to 1949 1 to 1926       1926/1926
(100 %)
1 diff
(100.0 %id)
BC006444 Skin, melanotic melanoma. .f 138 to 2391 1 to 2254 exact tiling clone, available from MGC, AAA   2254/2254
(100 %)
1 diff
(100.0 %id)
BE151515 head_neck .p 260 to 422 195 to 33     Submitted on the opposite strand 166/195
(85 %)
1 diff
(99.5 %id)
BE151787 head_neck .a 792 to 997 9 to 212       206/226
(91 %)
6 diff
(97.4 %id)
BE155424 head_neck .f 223 to 789 25 to 593       569/598
(95 %)
10 diff
(98.4 %id)
BE157449 head_neck .vg-u 1 to 407 1 to 404 F3S L4Y H21M V22* tiling clone,   404/404
(100 %)
7 diff
(98.3 %id)
BE157527 head_neck .vg-u 62 to 407 17 to 362   tiling clone,   346/362
(95 %)
6 diff
(98.4 %id)
BE700388 nervous_normal .e 774 to 1086 316 to 1       316/316
(100 %)
9 diff
(97.2 %id)
BF094982 uterus_tumor .vc-u 603 to 788 193 to 7       187/193
(96 %)
0 diff
(100 %id)
BF336893 colon .k 1060 to 1449 13 to 400   tiling clone,   388/408
(95 %)
12 diff
(97.1 %id)
BF353779 head_neck .a 43 to 415 381 to 3       379/381
(99 %)
6 diff
(98.5 %id)
BF353795 head_neck .a 43 to 447 407 to 3   tiling clone,   405/407
(99 %)
1 diff
(99.8 %id)
BF759453 colon .a 638 to 1162 44 to 567       524/567
(92 %)
12 diff
(97.9 %id)
BF811863 colon_ins .vc-u 197 to 422 231 to 5     Submitted on the opposite strand 227/239
(94 %)
0 diff
(100 %id)
BF955748 nervous_normal .d 647 to 1063 429 to 13       417/429
(97 %)
0 diff
(100 %id)
BG955733 colon .k 1330 to 1492 1 to 164   tiling clone,   164/164
(100 %)
7 diff
(95.8 %id)
DC300630   .i 76 to 618 1 to 543       543/543
(100 %)
1 diff
(99.9 %id)
BQ318593 colon .vc-u 197 to 456 9 to 269       261/279
(93 %)
5 diff
(98.3 %id)
BQ337549 marrow .a 1313 to 1615 306 to 2       305/379
(80 %)
0 diff
(100 %id)
DA147073 amygdala .f 96 to 674 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DC325678 caudate nucleus .e 1 to 583 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA258127 caudate nucleus .f 97 to 562 2 to 467   capped   466/466
(100 %)
0 diff
(100 %id)
DA288663 corpus callosum .ve 1 to 557 2 to 558 exact tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
DC331633 hippocampus .e 3 to 569 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DA375834 thalamus .va 560 to 1104 2 to 547   tiling clone, capped   546/546
(100 %)
2 diff
(99.7 %id)
BX099522 heart .e 1392 to 1746 1 to 355       355/764
(46 %)
1 diff
(99.9 %id)
BX108048   .d 512 to 1151 1 to 640   tiling clone,   640/640
(100 %)
1 diff
(99.9 %id)
BX111532   .b 3744 to 4094 1 to 351   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 351/351
(100 %)
0 diff
(100 %id)
CN261626 embryonic stem cells, DMSO-treated H9 cellline .e 659 to 1175 1 to 517       517/517
(100 %)
1 diff
(99.9 %id)
CN261627 embryonic stem cells, cell lines H1, H7, andH9 .f 26 to 800 1 to 775       775/775
(100 %)
2 diff
(99.8 %id)
CN261628 embryonic stem cells, cell lines H1, H7, andH9 .f 160 to 745 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
CN261629 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .s 1 to 753 1 to 753 exact tiling clone,   753/753
(100 %)
2 diff
(99.8 %id)
CN261630 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .h 139 to 589 1 to 451       451/451
(100 %)
0 diff
(100 %id)
CN261631 embryonic stem cells, DMSO-treated H9 cellline .e 578 to 1104 1 to 527       527/527
(100 %)
1 diff
(99.9 %id)
CN261632 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 146 to 490 1 to 345       345/345
(100 %)
2 diff
(99.5 %id)
CN261633 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .vc-u 234 to 879 646 to 1 exact   Submitted on the opposite strand 646/646
(100 %)
2 diff
(99.7 %id)
CN261634 embryonic stem cells, cell lines H1, H7, andH9 .f 150 to 341 1 to 192       192/192
(100 %)
2 diff
(99.0 %id)
CN273597 embryonic stem cells, DMSO-treated H9 cellline .a 2844 to 3397 1 to 554       554/558
(99 %)
5 diff
(99.2 %id)
CN284944 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .va 322 to 448 1 to 127       127/127
(100 %)
0 diff
(100 %id)
CN397688 embryonic stem cells, cell lines H1, H7, andH9 .b 3863 to 4104 242 to 1   tiling clone, Submitted on the opposite strand 242/242
(100 %)
3 diff
(98.8 %id)
CN400441 embryonic stem cells, cell lines H1, H7, andH9 .k 160 to 369 1 to 210   tiling clone,   210/210
(100 %)
0 diff
(100 %id)
CN400442 embryonic stem cells, cell lines H1, H7, andH9 .a 741 to 1087 1 to 347       347/347
(100 %)
0 diff
(100 %id)
CN400443 embryonic stem cells, cell lines H1, H7, andH9 .o 1 to 729 1 to 729 exact tiling clone,   729/729
(100 %)
1 diff
(99.9 %id)
CN400444 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 914 to 1443 1 to 531       531/531
(100 %)
4 diff
(99.3 %id)
CR618406 T cells (Jurkat cell line) Cot10-normalized .f 106 to 2336 1 to 2231 exact tiling clone,   2231/2231
(100 %)
0 diff
(100 %id)
CR735565 lung, small cell carcinoma .a 2886 to 3372 44 to 530   tiling clone,   487/539
(90 %)
3 diff
(99.5 %id)
CR746741 brain, medulla .c 43 to 570 1 to 528       528/528
(100 %)
0 diff
(100 %id)
CR747244 brain, medulla .c 45 to 574 1 to 530       530/530
(100 %)
0 diff
(100 %id)
BX353728 Neuroblastoma Cot 25-normalized .vc-u 542 to 882 1 to 341 T22K     341/341
(100 %)
3 diff
(99.2 %id)
AL559532 T cells from T cell leukemia .f 106 to 956 1 to 852       852/852
(100 %)
4 diff
(99.6 %id)
AL581130 T cells from T cell leukemia .e 1357 to 2231 876 to 1   tiling clone,   876/876
(100 %)
4 diff
(99.6 %id)
BX327464   .e 744 to 1663 13 to 933       921/934
(98 %)
52 diff
(94.5 %id)
DA462064 tongue, tumor tissue .d 157 to 678 2 to 523   capped   522/522
(100 %)
1 diff
(99.9 %id)
DB314587 tongue, tumor tissue .d 4022 to 4590 570 to 1       570/570
(100 %)
1 diff
(99.9 %id)
CV323727 colon_normal .a 588 to 939 1 to 353       353/353
(100 %)
8 diff
(97.8 %id)
CV367730 colon_normal .p 261 to 795 535 to 3   tiling clone, Submitted on the opposite strand 533/535
(99 %)
14 diff
(97.4 %id)
CV405005 head_neck .p 260 to 373 115 to 1     Submitted on the opposite strand 115/115
(100 %)
5 diff
(95.7 %id)
DA480446   .e 218 to 774 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
AL134594 brain .va 1 to 572 1 to 573   tiling clone,   573/573
(100 %)
3 diff
(99.5 %id)
BX505732   .b 1 to 631 1 to 631   tiling clone,   631/631
(100 %)
0 diff
(100 %id)
BX505733   .b 3631 to 4097 467 to 1       467/467
(100 %)
0 diff
(100 %id)
BX476884   .vh-u 1 to 352 1 to 352 exact tiling clone,   352/352
(100 %)
1 diff
(99.8 %id)
BX505894   .a 2221 to 2894 1 to 674       674/674
(100 %)
3 diff
(99.6 %id)
EC563928 Prostate .vc-u 757 to 859 1 to 103       103/103
(100 %)
0 diff
(100 %id)
T03184   .d 534 to 904 376 to 1   tiling clone,   376/393
(95 %)
7 diff
(98.3 %id)
FN059575 breast carcinoma .vc-u 1 to 73 1 to 73   tiling clone,   73/73
(100 %)
1 diff
(98.7 %id)
FN060538 breast carcinoma .m 1009 to 1113 1 to 105       105/105
(100 %)
1 diff
(99.1 %id)
FN103540 breast carcinoma .b 3680 to 3730 1 to 50       50/59
(84 %)
1 diff
(98.4 %id)
FN163236 breast carcinoma .vc-u 24 to 102 1 to 80       80/80
(100 %)
3 diff
(96.3 %id)
DB443250.
matches multiple genes
testis .f 79 to 533 1 to 456     also hits gene berblaby 456/461
(98 %)
7 diff
(98.5 %id)
DB444547 testis .c 25 to 451 1 to 420       420/427
(98 %)
22 diff
(94.9 %id)
DB509429 testis .a 3104 to 3430 1 to 326     Submitted on the opposite strand 326/326
(100 %)
8 diff
(97.6 %id)
DB463998.
matches multiple genes
hippocampus .f 104 to 574 1 to 471     also hits gene snorshoyby 471/471
(100 %)
0 diff
(100 %id)
DB489339 hypothalamus .m 1 to 458 8 to 465   tiling clone,   465/465
(100 %)
4 diff
(99.2 %id)
DB558788 hypothalamus .vc-u 451 to 881 1 to 431 exact   Submitted on the opposite strand 431/431
(100 %)
0 diff
(100 %id)
DC355308   .i 76 to 650 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
BP236387 coronary artery .e 394 to 976 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BP246629 Kidney .n 65 to 646 1 to 582   tiling clone,   582/582
(100 %)
3 diff
(99.5 %id)
T80962 liver and spleen .j 829 to 1083 1 to 257   tiling clone,   257/429
(59 %)
5 diff
(98.9 %id)
T80963 liver and spleen .j 1136 to 1510 395 to 10   tiling clone,   386/401
(96 %)
0 diff
(100 %id)
W96419 heart .e 1392 to 1849 1 to 461       461/461
(100 %)
5 diff
(99.0 %id)
W96420 heart .e 1859 to 2290 439 to 5       435/439
(99 %)
0 diff
(100 %id)
AA009587 liver and spleen .vc-u 173 to 565 1 to 400   fully sequenced,   400/400
(100 %)
6 diff
(98.5 %id)
AA009588 liver and spleen .vc-u 535 to 878 358 to 1 S16I G17W I19D R20S E21G ... fully sequenced,   358/358
(100 %)
8 diff
(97.8 %id)
AA143515 colon, tumor .k 276 to 705 20 to 459   tiling clone,   440/459
(95 %)
5 diff
(99.0 %id)
AA143516 colon, tumor .k 1437 to 1884 461 to 1   tiling clone,   461/462
(99 %)
30 diff
(93.6 %id)
AA441928   .b 3898 to 4094 196 to 1   fully sequenced,   196/196
(100 %)
2 diff
(99.0 %id)
AA442038   .b 3755 to 4066 9 to 320   fully sequenced,   312/320
(97 %)
6 diff
(98.2 %id)
AA476456   .d 511 to 1026 1 to 511       511/511
(100 %)
8 diff
(98.5 %id)
AA476457   .d 1219 to 1337 118 to 1       118/118
(100 %)
7 diff
(94.1 %id)
AA448934   .b 3761 to 4070 15 to 323   fully sequenced,   309/323
(95 %)
6 diff
(98.2 %id)
AA449444   .b 3875 to 4097 222 to 1   fully sequenced,   222/222
(100 %)
1 diff
(99.6 %id)
AA229749   .vi-u 1 to 303 1 to 303 H2T tiling clone,   303/303
(100 %)
4 diff
(98.7 %id)
AA230087   .m 826 to 1202 375 to 1   tiling clone,   375/376
(99 %)
7 diff
(98.2 %id)
AA620714   .b 3697 to 4094 397 to 1       397/397
(100 %)
5 diff
(98.8 %id)
AA723690 pooled .vc-u 389 to 876 488 to 1 exact     488/488
(100 %)
2 diff
(99.6 %id)
AA868205   .a 1496 to 1790 295 to 1       295/295
(100 %)
6 diff
(98.0 %id)
AA911067 pooled germ cell tumors .b 4006 to 4093 88 to 1       88/88
(100 %)
0 diff
(100 %id)
AA935552 pooled germ cell tumors .l 840 to 1013 174 to 1   tiling clone,   174/174
(100 %)
0 diff
(100 %id)
AA939064 pooled .b 3754 to 4098 345 to 1       345/345
(100 %)
9 diff
(97.4 %id)
AI183999   .u 1 to 368 368 to 1 exact tiling clone,   368/368
(100 %)
3 diff
(99.2 %id)
AI204181   .a 1367 to 1772 406 to 1       406/406
(100 %)
0 diff
(100 %id)
AI198599   .a 1385 to 1790 406 to 1       406/406
(100 %)
1 diff
(99.8 %id)
AI198616   .a 1385 to 1767 383 to 1       383/383
(100 %)
1 diff
(99.8 %id)
AI217359 pooled .l 715 to 1143 379 to 6   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 385/379
(101 %)
56 diff
(85.3 %id)
AI338413   .vc-u 447 to 876 443 to 14 exact AAA   430/430
(100 %)
2 diff
(99.6 %id)
AI369755 anaplastic oligodendroglioma, brain .a 1344 to 1790 447 to 1       447/447
(100 %)
3 diff
(99.4 %id)
AI825811 colon, colon tumor, RER+ .a 1487 to 1750 284 to 19       266/284
(93 %)
12 diff
(95.8 %id)
AI393339 pooled .p 137 to 371 183 to 417   tiling clone, Submitted on the opposite strand 235/417
(56 %)
6 diff
(98.6 %id)
AI445963 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 3697 to 4098 402 to 1       402/402
(100 %)
2 diff
(99.6 %id)
AI460267 colon .b 3710 to 4092 383 to 1       383/383
(100 %)
0 diff
(100 %id)
AI480202 anaplastic oligodendroglioma, brain .a 1601 to 1772 172 to 1       172/172
(100 %)
1 diff
(99.5 %id)
AI919428 anaplastic oligodendroglioma, brain .b 3941 to 4094 154 to 1       154/154
(100 %)
1 diff
(99.4 %id)
AI553784 anaplastic oligodendroglioma, brain .a 1287 to 1790 504 to 1       504/504
(100 %)
3 diff
(99.5 %id)
AI654238 ovary, tumor, 5 pooled (see description) .b 3633 to 4094 462 to 1       462/462
(100 %)
0 diff
(100 %id)
AI811797 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 3921 to 4094 186 to 13   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 174/174
(100 %)
8 diff
(95.5 %id)
AI811514 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 3678 to 4099 422 to 1       422/422
(100 %)
2 diff
(99.6 %id)
AI650840 pooled germ cell tumors .b 3805 to 4099 296 to 1       296/296
(100 %)
2 diff
(99.4 %id)
AI917774 pooled germ cell tumors .vc-u 534 to 878 345 to 1 exact     345/345
(100 %)
1 diff
(99.8 %id)
AI868804 pooled germ cell tumors .b 3866 to 4097 232 to 1       232/232
(100 %)
1 diff
(99.6 %id)
AI653170 pooled germ cell tumors .b 3805 to 4099 295 to 1       295/295
(100 %)
0 diff
(100 %id)
AI720529 colon .b 3689 to 4092 404 to 1       404/404
(100 %)
0 diff
(100 %id)
AI695127 colon .a 1281 to 1790 509 to 1   tiling clone,   509/509
(100 %)
1 diff
(99.9 %id)
AI749593 colon .b 3862 to 4089 233 to 4       230/233
(98 %)
0 diff
(100 %id)
AI761948 Kidney .vc-u 337 to 881 558 to 15 exact AAA   544/544
(100 %)
3 diff
(99.5 %id)
AI885313 anaplastic oligodendroglioma, brain .b 3721 to 4094 374 to 1       374/374
(100 %)
4 diff
(99.0 %id)
AI869831 serous papillary carcinoma, high grade, 2pooled tumors, uterus .vc-u 536 to 877 343 to 1 exact     343/344
(99 %)
2 diff
(99.5 %id)
AI887186 serous papillary carcinoma, high grade, 2pooled tumors, uterus .vc-u 406 to 876 471 to 1 exact     471/471
(100 %)
1 diff
(99.8 %id)
AI978681 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1352 to 1790 440 to 2       439/440
(99 %)
0 diff
(100 %id)
AI990092 pooled germ cell tumors .vc-u 534 to 874 368 to 28 exact AAA   341/341
(100 %)
7 diff
(98.0 %id)
AI990661 pooled germ cell tumors .vc-u 535 to 751 218 to 1       218/218
(100 %)
3 diff
(98.7 %id)
AW197133 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .vc-u 425 to 876 470 to 19 E9K AAA   452/452
(100 %)
5 diff
(98.9 %id)
AW079711 esophagus, squamous cell carcinoma .e 1890 to 2290 405 to 5   tiling clone,   401/406
(98 %)
0 diff
(100 %id)
AW148812 brain, tumor, 5 pooled (see description) .b 3643 to 4095 453 to 1       453/453
(100 %)
1 diff
(99.8 %id)
AW196293 serous papillary carcinoma, high grade, 2pooled tumors, uterus .vb 533 to 888 358 to 3   tiling clone,   356/358
(99 %)
0 diff
(100 %id)
AW016181   .vc-u 572 to 876 322 to 18 exact AAA   305/305
(100 %)
0 diff
(100 %id)
AW134849   .a 1450 to 1789 340 to 1       340/346
(98 %)
0 diff
(100 %id)
AW138667   .b 3837 to 4094 275 to 18   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 258/258
(100 %)
1 diff
(99.7 %id)
AW341175 carcinoid, lung .vc-u 451 to 834 1 to 384 exact   Submitted on the opposite strand 384/384
(100 %)
3 diff
(99.3 %id)
AW779267 pooled .a 1524 to 1790 268 to 1       268/271
(98 %)
2 diff
(99.3 %id)
BE304866 adenocarcinoma cell line, colon .b 2648 to 3075 1 to 427   tiling clone,   427/427
(100 %)
1 diff
(99.8 %id)
BF508485   .vc-u 502 to 876 392 to 18 exact AAA   375/392
(95 %)
1 diff
(99.8 %id)
BE047335 ovary, serous papillary tumor .b 3762 to 4088 327 to 1       327/327
(100 %)
13 diff
(96.1 %id)
BF002388 colon, colon tumor, RER+ .a 1487 to 1772 286 to 1       286/286
(100 %)
0 diff
(100 %id)
BF592173 breast, lobullar carcinoma in situ .t-u 449 to 680 243 to 12   tiling clone,   232/249
(93 %)
5 diff
(98.0 %id)
BE547267 cervical carcinoma cell line, cervix .l 1044 to 1749 1 to 713   tiling clone,   713/716
(99 %)
34 diff
(95.3 %id)
BE385672 melanotic melanoma, skin .f 133 to 786 1 to 657       657/688
(95 %)
5 diff
(99.3 %id)
BE409041 choriocarcinoma, placenta .e 774 to 1357 1 to 584       584/584
(100 %)
0 diff
(100 %id)
BF222703 pooled germ cell tumors .b 3805 to 4099 295 to 1       295/295
(100 %)
0 diff
(100 %id)
BE897968 melanotic melanoma, skin .h 138 to 743 1 to 605       605/909
(66 %)
7 diff
(99.3 %id)
BF968055 adrenal cortex carcinoma, cell line, adrenal gland .e 937 to 1372 1 to 435       435/436
(99 %)
9 diff
(98.0 %id)
BF970657 adrenal cortex carcinoma, cell line, adrenal gland .d 2803 to 3559 1 to 756       756/811
(93 %)
15 diff
(98.2 %id)
BG328441 adenocarcinoma cell line, colon .b 2958 to 3187 1 to 229       229/229
(100 %)
2 diff
(99.2 %id)
BG396083 eye, retinoblastoma .vd 1 to 486 1 to 486   tiling clone,   486/565
(86 %)
8 diff
(98.6 %id)
BG477770 melanotic melanoma, skin .f 113 to 934 1 to 828       826/828
(99 %)
19 diff
(97.8 %id)
BG687158 lung, mucoepidermoid carcinoma .n 1 to 730 1 to 752 E95Q N96Q E97* tiling clone,   555/753
(73 %)
26 diff
(96.6 %id)
BG716391 brain, hypothalamus .m -11 to 840 1 to 844   tiling clone,   844/916
(92 %)
34 diff
(96.3 %id)
BG696618 skin .b 2994 to 3772 1 to 778   tiling clone,   778/779
(99 %)
8 diff
(99.0 %id)
BI116830 lung, small cell carcinoma .d 2432 to 3119 7 to 709       703/890
(78 %)
41 diff
(95.4 %id)
BI520398 brain, medulla .c 45 to 909 1 to 865       865/865
(100 %)
10 diff
(98.9 %id)
BI825677 brain, medulla .c 42 to 951 1 to 925       925/926
(99 %)
17 diff
(98.2 %id)
BI826822 brain, medulla .c 43 to 813 1 to 769       769/769
(100 %)
3 diff
(99.7 %id)
BI832040 brain, medulla .c 45 to 791 32 to 776       743/776
(95 %)
11 diff
(98.6 %id)
BI834811 pooled pancreas and spleen .va 606 to 1273 1 to 677 E19R E20T G21R M22G R23N ... tiling clone,   655/799
(81 %)
24 diff
(97.0 %id)
BI913313 brain .l 1 to 893 1 to 891 C7G S35R K154N I156D Q157S ... tiling clone,   891/899
(99 %)
11 diff
(98.8 %id)
BI859600 breast, mammary adenocarcinoma, cell line .e 1291 to 2081 1 to 791       791/796
(99 %)
19 diff
(97.7 %id)
BM011279 brain, neuroblastoma, cell line .b 2851 to 3187 1 to 337       337/337
(100 %)
2 diff
(99.5 %id)
BM545178 ovary (pool of 3) .h 4 to 1166 18 to 1184   tiling clone,   1165/1187
(98 %)
51 diff
(95.8 %id)
BQ181716 Knee, Osteoarthritic Cartilage .b 3419 to 4094 692 to 17   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 676/676
(100 %)
5 diff
(99.3 %id)
BQ016839 lung, Lung Focal Fibrosis .vc-u 336 to 878 3 to 545 exact AAA Submitted on the opposite strand 543/545
(99 %)
0 diff
(100 %id)
BQ071469 brain, neuroblastoma, cell line .f 116 to 880 1 to 766       766/1056
(72 %)
5 diff
(99.6 %id)
BQ071470 brain, neuroblastoma, cell line .f 116 to 1027 1 to 915       915/1031
(88 %)
13 diff
(98.8 %id)
CB216574 normal endometrium, mid-secretory phase,cycle day 23, uterus .d 2892 to 3446 1 to 555   tiling clone,   555/555
(100 %)
2 diff
(99.7 %id)
BQ219143 melanotic melanoma, skin .j 1 to 882 1 to 891   tiling clone,   891/891
(100 %)
12 diff
(98.7 %id)
BU167112 melanotic melanoma, skin .e 772 to 1635 1 to 869       869/869
(100 %)
5 diff
(99.5 %id)
BQ894214 brain, neuroblastoma, cell line .f 130 to 1027 42 to 945       904/969
(93 %)
33 diff
(96.6 %id)
BU508172 leiomyosarcoma, uterus .i 95 to 1166 1 to 1073       1073/1096
(97 %)
24 diff
(97.9 %id)
BU844504 ovary, teratocarcinoma, cell line .h 166 to 651 1 to 493       493/780
(63 %)
18 diff
(97.7 %id)
CX784327 human embryonic stem cells .i 94 to 907 1 to 814       814/814
(100 %)
0 diff
(100 %id)
CX871859 embryonic stem .f 117 to 874 1 to 759       759/759
(100 %)
10 diff
(98.7 %id)
CX873624 embryonic stem .e 458 to 1242 1 to 785       785/785
(100 %)
0 diff
(100 %id)
CD642821 Embryonic Stem cells .d 1 to 806 1 to 804   tiling clone,   804/804
(100 %)
8 diff
(99.1 %id)
CF127793 Chondrosarcoma Lung Metastasis cell lines, lung .e 1351 to 2064 1 to 711   tiling clone,   711/711
(100 %)
5 diff
(99.3 %id)
CK002982 brain/CNS, Human Brain - Cerebellar Cortex .vc-u 15 to 690 1 to 676   tiling clone,   676/676
(100 %)
4 diff
(99.5 %id)
DA612897   .f 117 to 705 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
TI_43964161   .c 45 to 851 64 to 873       810/928
(87 %)
16 diff
(98.3 %id)
TI_57170739   .c 40 to 951 68 to 994       927/995
(93 %)
23 diff
(97.7 %id)
TI_57173113   .c 43 to 813 30 to 798       769/798
(96 %)
9 diff
(98.9 %id)
TI_57173114   .c 45 to 791 32 to 776       743/776
(95 %)
11 diff
(98.6 %id)
TI_57168108   .va 604 to 1273 32 to 710 E19R E20T G21R M22G R23N ...     657/832
(78 %)
9 diff
(99.0 %id)
TI_57241285   .l 1 to 893 31 to 921 C7G S35R K154N I156D Q157S ...     891/929
(95 %)
20 diff
(97.9 %id)
TI_57190639   .e 1291 to 2081 86 to 876       791/796
(99 %)
19 diff
(97.7 %id)
TI_59380437   .b 2852 to 3255 58 to 461   tiling clone,   404/405
(99 %)
2 diff
(99.6 %id)
N56073   .b 2627 to 2836 1 to 210       210/210
(100 %)
7 diff
(96.7 %id)
R41127   .b 3432 to 3588 159 to 1       159/162
(98 %)
10 diff
(93.9 %id)
DC428442   .e 187 to 766 1 to 577       577/577
(100 %)
5 diff
(99.2 %id)
DA650023   .f 98 to 639 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
NM_032358.3   .f 27 to 2391 1 to 2365 exact RefSeq, AAA   2365/2365
(100 %)
0 diff
(100 %id)
NM_173593.3   .a 1 to 3438 1 to 3438 exact RefSeq,   3438/3438
(100 %)
0 diff
(100 %id)
NM_001130146.1   .i 1 to 2311 1 to 2311 exact RefSeq, AAA   2311/2311
(100 %)
0 diff
(100 %id)
NM_001130147.1   .h 1 to 2338 1 to 2338 exact RefSeq, AAA   2338/2338
(100 %)
0 diff
(100 %id)
NM_001130148.1   .e 3 to 2286 1 to 2284 exact RefSeq, AAA   2284/2284
(100 %)
0 diff
(100 %id)
DA711064   .f 27 to 598 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA721818   .k 1 to 557 9 to 565   tiling clone, capped   564/564
(100 %)
7 diff
(98.8 %id)
DA731550   .e 411 to 1230 2 to 826   capped   825/872
(94 %)
22 diff
(97.5 %id)
DA735834   .f 110 to 880 2 to 772   capped   771/806
(95 %)
5 diff
(99.4 %id)
DB368179   .f 1844 to 2391 545 to 1       545/550
(99 %)
14 diff
(97.5 %id)
DC424449   .g 1 to 718 1 to 718   tiling clone,   718/725
(99 %)
2 diff
(99.8 %id)
DC427257   .g 1862 to 2391 532 to 1   tiling clone,   532/532
(100 %)
20 diff
(96.3 %id)
DA738744   .f 97 to 674 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DC371380   .i 83 to 650 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
CV573172 cornea, eye .t-u 1 to 615 1 to 615   tiling clone,   615/615
(100 %)
0 diff
(100 %id)
DA817706   .f 104 to 664 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA849717 placenta .f 1 to 549 2 to 550   tiling clone, capped   549/549
(100 %)
1 diff
(99.9 %id)
CR986972 T-Lymphocytes .e 18 to 823 1 to 809       809/810
(99 %)
16 diff
(98.1 %id)
BM791086 stomach .b 3237 to 3759 1 to 523       523/523
(100 %)
3 diff
(99.5 %id)
DC389793 Spleen .h 46 to 567 1 to 522       522/527
(99 %)
2 diff
(99.7 %id)
DN996032 breast cancer, Mammary gland (cancer tissue) .q 1 to 593 2 to 594 exact tiling clone,   593/594
(99 %)
6 diff
(99.0 %id)
DB006760 cervix, tumor tissue .d 2221 to 2791 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB335289 cervix, tumor tissue .d 4087 to 4590 505 to 1       505/505
(100 %)
1 diff
(99.9 %id)
DB021317 testis .f 33 to 596 2 to 569   capped   568/569
(99 %)
6 diff
(99.0 %id)
DB040200 testis .c 25 to 608 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DB337769 testis .c 1468 to 1949 482 to 1       482/482
(100 %)
0 diff
(100 %id)
DB046067 testis .a 1617 to 2179 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB338199 testis .a 2911 to 3438 529 to 1       529/529
(100 %)
2 diff
(99.7 %id)
DB061883 testis .r 16 to 568 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
DB062369 testis .vf -8 to 495 2 to 505 T23A tiling clone, capped   504/504
(100 %)
5 diff
(99.1 %id)
DB062897 testis .r 1 to 539 2 to 540 exact tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
DB066878 testis .p 1 to 574 2 to 576   tiling clone, capped   575/575
(100 %)
1 diff
(99.9 %id)
DB079072 testis .vb 1 to 552 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
DB079892 testis .c 20 to 583 2 to 565   capped   564/568
(99 %)
1 diff
(99.9 %id)
DB091871 testis .c 1 to 560 2 to 561   tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
DB092121 testis .c 25 to 573 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB100518 testis .c 25 to 621 2 to 597   capped   596/596
(100 %)
4 diff
(99.4 %id)
DB123806 thymus .f 97 to 707 2 to 612   capped   611/611
(100 %)
0 diff
(100 %id)
TI_149295161   .vc-u 309 to 875 602 to 38 exact AAA   565/1014
(55 %)
3 diff
(99.8 %id)
TI_149295443   .vc-u 109 to 883 846 to 83 exact AAA   764/808
(94 %)
16 diff
(98.1 %id)
TI_154193473   .e 1347 to 2243 57 to 929   AAA   873/1031
(84 %)
20 diff
(98.1 %id)
DB226149 trachea .a 1016 to 1599 2 to 585   tiling clone, capped   584/584
(100 %)
2 diff
(99.7 %id)
BU683642 lung, Primary Lung Cystic Fibrosis EpithelialCells .vc-u 253 to 883 646 to 17 exact AAA   630/634
(99 %)
4 diff
(99.4 %id)
BQ447741 Knee, Osteoarthritic Cartilage .b 3419 to 4094 691 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 675/675
(100 %)
3 diff
(99.6 %id)
BU624919 cell lines, Enchondroma .vc-u 249 to 876 645 to 19 exact tiling clone, AAA   627/627
(100 %)
2 diff
(99.7 %id)
W22940 eye, retina .e 1268 to 1770 34 to 540       507/544
(93 %)
23 diff
(95.8 %id)
DA025430   .c 40 to 951 68 to 994   capped Suspected internal deletion, this clone was ignored 927/995
(93 %)
23 diff
(97.7 %id)
AW862968 stomach_normal .c 43 to 813 30 to 798       769/798
(96 %)
9 diff
(98.9 %id)
AW863013 stomach_normal .c 45 to 791 32 to 776       743/776
(95 %)
11 diff
(98.6 %id)
CN397689 embryonic stem cells, DMSO-treated H9 cellline .va 604 to 1273 32 to 710     Submitted on the opposite strand 657/832
(78 %)
9 diff
(99.0 %id)
DA465062   .l 1 to 893 31 to 921   capped This clone was ignored 891/929
(95 %)
20 diff
(97.9 %id)
DB314643   .e 1291 to 2081 86 to 876     This clone was ignored 791/796
(99 %)
19 diff
(97.7 %id)
T49520 placenta .b 2852 to 3255 58 to 461   tiling clone,   404/405
(99 %)
2 diff
(99.6 %id)
T49521 placenta .b 2627 to 2836 1 to 210       210/210
(100 %)
7 diff
(96.7 %id)
AI990822 pooled germ cell tumors .b 3432 to 3588 159 to 1     Suspected internal deletion, this clone was ignored 159/162
(98 %)
10 diff
(93.9 %id)
BE550637 pooled germ cell tumors .e 187 to 766 1 to 577   AAA This clone was ignored 577/577
(100 %)
5 diff
(99.2 %id)
BE671924 pooled germ cell tumors .f 98 to 639 2 to 543     Suspected internal deletion, this clone was ignored 542/542
(100 %)
1 diff
(99.9 %id)
BU185447 ductal carcinoma, cell line, Pancreas .f 27 to 2391 1 to 2365   RefSeq, Suspected internal deletion, this clone was ignored 2365/2365
(100 %)
0 diff
(100 %id)
BQ691297 ductal carcinoma, cell line, Pancreas .a 1 to 3438 1 to 3438   RefSeq, Suspected internal deletion, this clone was ignored 3438/3438
(100 %)
0 diff
(100 %id)
BQ898340 brain, neuroblastoma, cell line .i 1 to 2311 1 to 2311   RefSeq, Suspected internal deletion, this clone was ignored 2311/2311
(100 %)
0 diff
(100 %id)
BQ926887 brain, neuroblastoma, cell line .h 1 to 2338 1 to 2338   RefSeq, Suspected internal deletion, this clone was ignored 2338/2338
(100 %)
0 diff
(100 %id)
NM_001130148.1   .e 3 to 2286 1 to 2284 exact RefSeq, AAA   2284/2284
(100 %)
0 diff
(100 %id)
DA711064   .f 27 to 598 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA721818   .k 1 to 557 9 to 565   tiling clone, capped   564/564
(100 %)
7 diff
(98.8 %id)
DA731550   .e 411 to 1230 2 to 826   capped   825/872
(94 %)
22 diff
(97.5 %id)
DA735834   .f 110 to 880 2 to 772   capped   771/806
(95 %)
5 diff
(99.4 %id)
DB368179   .f 1844 to 2391 545 to 1       545/550
(99 %)
14 diff
(97.5 %id)
DC424449   .g 1 to 718 1 to 718   tiling clone,   718/725
(99 %)
2 diff
(99.8 %id)
DC427257   .g 1862 to 2391 532 to 1   tiling clone,   532/532
(100 %)
20 diff
(96.3 %id)
DA738744   .f 97 to 674 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DC371380   .i 83 to 650 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
CV573172 cornea, eye .t-u 1 to 615 1 to 615   tiling clone,   615/615
(100 %)
0 diff
(100 %id)
CV573172 cornea, eye .t-u 1 to 615 1 to 615   tiling clone,   615/615
(100 %)
0 diff
(100 %id)
DA817706   .f 104 to 664 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA849717 placenta .f 1 to 549 2 to 550   tiling clone, capped   549/549
(100 %)
1 diff
(99.9 %id)
CR986972 T-Lymphocytes .e 18 to 823 1 to 809       809/810
(99 %)
16 diff
(98.1 %id)
BM791086 stomach .b 3237 to 3759 1 to 523       523/523
(100 %)
3 diff
(99.5 %id)
DC389793 Spleen .h 46 to 567 1 to 522       522/527
(99 %)
2 diff
(99.7 %id)
DN996032 breast cancer, Mammary gland (cancer tissue) .q 1 to 593 2 to 594 exact tiling clone,   593/594
(99 %)
6 diff
(99.0 %id)
DN996032 breast cancer, Mammary gland (cancer tissue) .q 1 to 593 2 to 594 exact tiling clone,   593/594
(99 %)
6 diff
(99.0 %id)
DB006760 cervix, tumor tissue .d 2221 to 2791 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB335289 cervix, tumor tissue .d 4087 to 4590 505 to 1       505/505
(100 %)
1 diff
(99.9 %id)
DB021317 testis .f 33 to 596 2 to 569   capped   568/569
(99 %)
6 diff
(99.0 %id)
DB040200 testis .c 25 to 608 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DB337769 testis .c 1468 to 1949 482 to 1       482/482
(100 %)
0 diff
(100 %id)
DB046067 testis .a 1617 to 2179 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB338199 testis .a 2911 to 3438 529 to 1       529/529
(100 %)
2 diff
(99.7 %id)
DB061883 testis .r 16 to 568 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
DB062369 testis .vf -8 to 495 2 to 505 T23A tiling clone, capped   504/504
(100 %)
5 diff
(99.1 %id)
DB062897 testis .r 1 to 539 2 to 540 exact tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
DB066878 testis .p 1 to 574 2 to 576   tiling clone, capped   575/575
(100 %)
1 diff
(99.9 %id)
DB079072 testis .vb 1 to 552 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
DB079892 testis .c 20 to 583 2 to 565   capped   564/568
(99 %)
1 diff
(99.9 %id)
DB091871 testis .c 1 to 560 2 to 561   tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
DB092121 testis .c 25 to 573 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB100518 testis .c 25 to 621 2 to 597   capped   596/596
(100 %)
4 diff
(99.4 %id)
DB123806 thymus .f 97 to 707 2 to 612   capped   611/611
(100 %)
0 diff
(100 %id)
TI_149295161   .vc-u 309 to 875 602 to 38 exact AAA   565/1014
(55 %)
3 diff
(99.8 %id)
TI_149295443   .vc-u 109 to 883 846 to 83 exact AAA   764/808
(94 %)
16 diff
(98.1 %id)
TI_154193473   .e 1347 to 2243 57 to 929   AAA   873/1031
(84 %)
20 diff
(98.1 %id)
DB226149 trachea .a 1016 to 1599 2 to 585   tiling clone, capped   584/584
(100 %)
2 diff
(99.7 %id)
BU683642 lung, Primary Lung Cystic Fibrosis EpithelialCells .vc-u 253 to 883 646 to 17 exact AAA   630/634
(99 %)
4 diff
(99.4 %id)
BU683642 lung, Primary Lung Cystic Fibrosis EpithelialCells .vc-u 253 to 883 646 to 17 exact AAA   630/634
(99 %)
4 diff
(99.4 %id)
BQ447741 Knee, Osteoarthritic Cartilage .b 3419 to 4094 691 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 675/675
(100 %)
3 diff
(99.6 %id)
BQ447741 Knee, Osteoarthritic Cartilage .b 3419 to 4094 691 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 675/675
(100 %)
3 diff
(99.6 %id)
BU624919 cell lines, Enchondroma .vc-u 249 to 876 645 to 19 exact tiling clone, AAA   627/627
(100 %)
2 diff
(99.7 %id)
BU624919 cell lines, Enchondroma .vc-u 249 to 876 645 to 19 exact tiling clone, AAA   627/627
(100 %)
2 diff
(99.7 %id)
W22940 eye, retina .e 1268 to 1770 34 to 540       507/544
(93 %)
23 diff
(95.8 %id)
W22940 eye, retina .e 1268 to 1770 34 to 540       507/544
(93 %)
23 diff
(95.8 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t-u, .u, .va, .vb, .vc-u, .vd, .ve, .vf, .vg-u, .vh-u, .vi-u, .vj-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C