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Gene HS3ST1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
150 supporting clones for gene HS3ST1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AI350270 carcinoid, lung .a 1 to 403 403 to 1   tiling clone,   403/403
(100 %)
4 diff
(99.1 %id)
AK096823 Prostate .a 302 to 2730 1 to 2428 exact tiling clone, available from FLJ,   2428/2428
(100 %)
6 diff
(99.8 %id)
DA878428 Prostate .a 303 to 756 2 to 453   capped   452/452
(100 %)
1 diff
(99.8 %id)
DA536018 heart .a 448 to 906 2 to 460   capped   459/459
(100 %)
1 diff
(99.8 %id)
DA778356 brain .a 449 to 1025 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB113106 thymus .a 478 to 1035 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
DA982114 synovial membrane tissue from rheumatioidarthritis .a 568 to 1050 2 to 484   capped   483/483
(100 %)
0 diff
(100 %id)
DB258093 uterus .a 732 to 1294 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA077399 cerebellum .a 740 to 1302 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA126095 cerebellum .a 745 to 1331 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
DA587082 lung .a 762 to 1319 2 to 561   tiling clone, capped   560/561
(99 %)
4 diff
(99.3 %id)
DB208093 trachea .a 910 to 1367 2 to 459   capped   458/458
(100 %)
2 diff
(99.6 %id)
DR005163 Prostate .a 946 to 1618 1 to 673       673/677
(99 %)
9 diff
(98.7 %id)
DA101380 cerebellum .a 1119 to 1698 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
BP252108 Kidney .a 1142 to 1716 1 to 575       575/575
(100 %)
8 diff
(98.7 %id)
BP252373 Kidney .a 1142 to 1722 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
DA058727 cerebellum .a 1143 to 1709 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA084747 cerebellum .a 1143 to 1712 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DA540201 lung .a 1143 to 1720 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA058013 cerebellum .a 1146 to 1723 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA074435 cerebellum .a 1152 to 1643 2 to 494   capped   493/493
(100 %)
3 diff
(99.4 %id)
DA088527 cerebellum .a 1152 to 1699 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
NM_005114.2   .a 1154 to 3118 1 to 1965 exact RefSeq,   1965/1965
(100 %)
2 diff
(99.9 %id)
BI488465 brain .a 1155 to 1716 1 to 563   fully sequenced,   563/563
(100 %)
3 diff
(99.5 %id)
TI_45378922   .a 1155 to 1724 46 to 616   fully sequenced,   571/616
(92 %)
8 diff
(98.8 %id)
TI_44159965   .a 1164 to 1724 31 to 591       561/747
(75 %)
7 diff
(99.1 %id)
BI524073 pooled lung and spleen .a 1165 to 1716 1 to 552       552/552
(100 %)
2 diff
(99.7 %id)
BI547194 brain, hippocampus .a 1167 to 1988 1 to 822       822/822
(100 %)
13 diff
(98.5 %id)
BI669169 brain, hypothalamus .a 1168 to 1836 1 to 669       669/669
(100 %)
7 diff
(99.0 %id)
TI_44346051   .a 1168 to 1836 88 to 756       669/756
(88 %)
8 diff
(99.0 %id)
BC057803 Brain, hippocampus .a 1172 to 2686 1 to 1515 P22T tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 1515/1515
(100 %)
6 diff
(99.7 %id)
TI_44167877   .a 1172 to 1988 126 to 942       817/942
(86 %)
10 diff
(99.0 %id)
DA016796 adrenal gland .a 1174 to 1685 2 to 513   capped   512/512
(100 %)
2 diff
(99.7 %id)
DA087730 cerebellum .a 1174 to 1742 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DB049759 testis .a 1174 to 1738 2 to 566   capped   565/565
(100 %)
4 diff
(99.3 %id)
DB498571 hypothalamus .a 1176 to 1676 1 to 501       501/501
(100 %)
9 diff
(98.3 %id)
BM763048 myeloma .a 1178 to 1718 1 to 541       541/541
(100 %)
3 diff
(99.5 %id)
CB959949 Human Placenta, placenta .a 1179 to 1889 28 to 746       719/774
(92 %)
17 diff
(97.9 %id)
TI_57183234   .a 1184 to 1724 32 to 571       540/909
(59 %)
8 diff
(99.2 %id)
DA057487 cerebellum .a 1188 to 1754 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
BC025735 Lung, Spleen, fetal, pooled .a 1188 to 1715 1 to 528   available from MGC,   528/528
(100 %)
2 diff
(99.7 %id)
BI769220 pooled lung and spleen .a 1189 to 1716 1 to 527   available from MGC,   527/527
(100 %)
3 diff
(99.5 %id)
BF000296 colon, colon tumor, RER+ .a 1191 to 1724 534 to 1       534/534
(100 %)
3 diff
(99.5 %id)
DA761251 tongue .a 1192 to 1559 2 to 369   capped   368/368
(100 %)
3 diff
(99.2 %id)
DB472002 hippocampus .a 1198 to 1692 1 to 495       495/495
(100 %)
3 diff
(99.4 %id)
AW072003 anaplastic oligodendroglioma, brain .a 1238 to 1696 459 to 1       459/459
(100 %)
1 diff
(99.8 %id)
AI362722 anaplastic oligodendroglioma, brain .a 1243 to 1724 482 to 1       482/485
(99 %)
1 diff
(99.8 %id)
AI394300 B-cell, chronic lymphotic leukemia .a 1243 to 1724 482 to 1       482/482
(100 %)
1 diff
(99.8 %id)
AA632194 breast .a 1246 to 1696 451 to 1       451/451
(100 %)
1 diff
(99.8 %id)
AI147124 pooled .a 1258 to 1720 455 to 1       455/458
(99 %)
19 diff
(95.9 %id)
AA587064 colon, colon tumor RER+ .a 1259 to 1724 465 to 2       464/465
(99 %)
1 diff
(99.8 %id)
AW205947   .a 1262 to 1723 462 to 1       462/462
(100 %)
14 diff
(97.0 %id)
BF057452 fibrotheoma, ovary .a 1276 to 1724 448 to 1       448/448
(100 %)
2 diff
(99.6 %id)
AI298077 carcinoid, lung .a 1285 to 1706 422 to 1       422/422
(100 %)
1 diff
(99.8 %id)
AW079385 colon, moderately differentiated adenocarcinoma .a 1285 to 1677 394 to 1       394/394
(100 %)
2 diff
(99.5 %id)
AW206327   .a 1285 to 1723 439 to 1       439/439
(100 %)
1 diff
(99.8 %id)
AW028686 fibrotheoma, ovary .a 1288 to 1694 407 to 1       407/407
(100 %)
7 diff
(98.3 %id)
BF058455 fibrotheoma, ovary .a 1296 to 1724 429 to 1       429/429
(100 %)
8 diff
(98.2 %id)
BE670470 carcinoid, lung .a 1299 to 1584 288 to 3       286/288
(99 %)
1 diff
(99.7 %id)
AW134661   .a 1309 to 1723 415 to 1       415/425
(97 %)
1 diff
(99.8 %id)
BF732395 fibrotheoma, ovary .a 1314 to 1691 379 to 1       379/379
(100 %)
2 diff
(99.5 %id)
AA808302 germinal center B cell .a 1326 to 1653 325 to 1       325/325
(100 %)
3 diff
(99.1 %id)
AA639423 colon, colon tumor RER+ .a 1327 to 1652 325 to 4       322/325
(99 %)
0 diff
(100 %id)
BI489006 brain .a 1330 to 1716 387 to 1   fully sequenced,   387/387
(100 %)
0 diff
(100 %id)
TI_45378923   .a 1338 to 1724 473 to 87   fully sequenced,   387/473
(81 %)
0 diff
(100 %id)
BE551298 carcinoid, lung .a 1342 to 1722 381 to 1       381/381
(100 %)
0 diff
(100 %id)
AF019386   .a 1367 to 2663 9 to 1305 exact     1297/1305
(99 %)
6 diff
(99.6 %id)
TI_153988107   .a 1367 to 1724 438 to 81       358/793
(45 %)
0 diff
(100 %id)
AI762633 colon, colon tumor, RER+ .a 1371 to 1696 326 to 1       326/326
(100 %)
0 diff
(100 %id)
AW204428   .a 1388 to 1723 336 to 1       336/336
(100 %)
2 diff
(99.5 %id)
AI025216   .a 1394 to 1696 303 to 1       303/303
(100 %)
0 diff
(100 %id)
AA639424 colon, colon tumor RER+ .a 1420 to 1562 141 to 1       141/141
(100 %)
8 diff
(94.4 %id)
BF063604 colon, colon tumor, RER+ .a 1423 to 1674 252 to 1       252/252
(100 %)
2 diff
(99.3 %id)
BF115406 fibrotheoma, ovary .a 1465 to 1679 216 to 2       215/216
(99 %)
0 diff
(100 %id)
TI_1948208651   .a 1470 to 2051 119 to 702   fully sequenced,   584/702
(83 %)
8 diff
(98.9 %id)
TI_1948208817   .a 1470 to 1895 123 to 549   fully sequenced,   427/549
(77 %)
6 diff
(99.0 %id)
TI_1948208986   .a 1470 to 1822 125 to 476   fully sequenced,   352/476
(73 %)
6 diff
(98.8 %id)
TI_1948209152   .a 1470 to 1961 125 to 621   fully sequenced,   497/621
(80 %)
7 diff
(98.9 %id)
EL734143 mixed .a 1477 to 2130 1 to 654       654/654
(100 %)
1 diff
(99.9 %id)
AW300426 Kidney .a 1477 to 1687 211 to 1       211/211
(100 %)
2 diff
(99.1 %id)
BE712791 head_neck .a 1500 to 1927 1 to 428       428/428
(100 %)
0 diff
(100 %id)
AA858288 Kidney .a 1526 to 1720 193 to 1       193/193
(100 %)
9 diff
(95.4 %id)
AA878930 2 pooled tumors (clear cell type), Kidney .a 1543 to 1722 180 to 2       179/180
(99 %)
0 diff
(100 %id)
TI_151703916   .a 1717 to 2169 57 to 511     Submitted on the opposite strand 455/515
(88 %)
4 diff
(99.3 %id)
BF594148 brain, glioblastoma (pooled) .a 1730 to 2290 1 to 561     Submitted on the opposite strand 561/562
(99 %)
21 diff
(96.3 %id)
AI299178 carcinoid, lung .a 1735 to 2235 1 to 501     Submitted on the opposite strand 501/501
(100 %)
3 diff
(99.5 %id)
AI222731 adenocarcinoma, colon .a 1735 to 2286 1 to 552     Submitted on the opposite strand 552/552
(100 %)
16 diff
(97.2 %id)
AI368507 anaplastic oligodendroglioma, brain .a 1735 to 2062 1 to 330     Submitted on the opposite strand 330/330
(100 %)
3 diff
(99.1 %id)
BE676274 B-cell, chronic lymphotic leukemia .a 1735 to 2355 1 to 621     Submitted on the opposite strand 621/621
(100 %)
17 diff
(97.3 %id)
AA460705   .a 1736 to 2116 1 to 381     Submitted on the opposite strand 381/381
(100 %)
0 diff
(100 %id)
BG746348 adenocarcinoma cell line, colon .a 1739 to 2462 1 to 735       735/783
(93 %)
19 diff
(97.6 %id)
N90867 lung .a 1747 to 2243 1 to 484     Submitted on the opposite strand 484/532
(90 %)
18 diff
(96.7 %id)
N90856 lung .a 1747 to 2301 1 to 538     Submitted on the opposite strand 538/539
(99 %)
18 diff
(96.7 %id)
AA746018 Kidney .a 1747 to 2129 1 to 384     Submitted on the opposite strand 384/384
(100 %)
2 diff
(99.5 %id)
AA808603 carcinoid, lung .a 1747 to 2038 1 to 292     Submitted on the opposite strand 292/292
(100 %)
0 diff
(100 %id)
AA904256 carcinoid, lung .a 1747 to 2078 1 to 331     Submitted on the opposite strand 331/331
(100 %)
1 diff
(99.7 %id)
AA887551 Kidney .a 1747 to 2009 1 to 263     Submitted on the opposite strand 263/264
(99 %)
3 diff
(98.9 %id)
AA937784 carcinoid, lung .a 1747 to 2267 1 to 521     Submitted on the opposite strand 521/522
(99 %)
9 diff
(98.3 %id)
AA972757 carcinoid, lung .a 1747 to 2193 1 to 446     Submitted on the opposite strand 446/446
(100 %)
1 diff
(99.8 %id)
AA988853 carcinoid, lung .a 1747 to 2088 1 to 341     Submitted on the opposite strand 341/341
(100 %)
2 diff
(99.5 %id)
AI161166 brain, glioblastoma (pooled) .a 1747 to 2322 1 to 576     Submitted on the opposite strand 576/576
(100 %)
14 diff
(97.6 %id)
AI439546 B-cell, chronic lymphotic leukemia .a 1747 to 2234 1 to 488     Submitted on the opposite strand 488/489
(99 %)
3 diff
(99.4 %id)
AI431882 Kidney .a 1747 to 2312 1 to 566     Submitted on the opposite strand 566/570
(99 %)
3 diff
(99.5 %id)
AI582352 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 1747 to 2353 1 to 607     Submitted on the opposite strand 607/618
(98 %)
4 diff
(99.4 %id)
AI870763 anaplastic oligodendroglioma, brain .a 1747 to 2354 1 to 608     Submitted on the opposite strand 608/609
(99 %)
4 diff
(99.4 %id)
AI971626 pooled germ cell tumors .a 1747 to 2397 1 to 651     Submitted on the opposite strand 651/651
(100 %)
7 diff
(99.0 %id)
AW028669 fibrotheoma, ovary .a 1747 to 2218 1 to 471     Submitted on the opposite strand 471/471
(100 %)
3 diff
(99.4 %id)
BF940710 fibrotheoma, ovary .a 1747 to 2397 1 to 651     Submitted on the opposite strand 651/651
(100 %)
13 diff
(98.1 %id)
AI345977 adenocarcinoma, colon .a 1748 to 2233 1 to 487     Submitted on the opposite strand 487/494
(98 %)
8 diff
(98.4 %id)
H86812 eye, retina .a 1769 to 2084 1 to 319     Submitted on the opposite strand 319/319
(100 %)
3 diff
(99.1 %id)
AI971645 pooled germ cell tumors .a 1770 to 2391 1 to 622     Submitted on the opposite strand 622/622
(100 %)
48 diff
(92.3 %id)
BG820479 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1778 to 2564 1 to 787       787/788
(99 %)
4 diff
(99.5 %id)
BG820537 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1779 to 2554 1 to 783       783/783
(100 %)
12 diff
(98.5 %id)
TI_1948208987   .a 1792 to 2405 739 to 117   fully sequenced,   623/739
(84 %)
17 diff
(97.7 %id)
BM743529 Ascites, stomach .a 1824 to 2402 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
TI_1948208818   .a 1865 to 2405 665 to 118   fully sequenced,   548/665
(82 %)
12 diff
(98.2 %id)
BF736655 bladder_tumor .a 1866 to 2266 1 to 401       401/436
(91 %)
8 diff
(98.2 %id)
TI_1948209153   .a 1931 to 2405 599 to 120   fully sequenced,   480/599
(80 %)
6 diff
(99.0 %id)
AI700294 colon .a 1953 to 2250 1 to 298     Submitted on the opposite strand 298/298
(100 %)
17 diff
(94.3 %id)
TI_1948208652   .a 2021 to 2405 514 to 120   fully sequenced,   395/514
(76 %)
5 diff
(99.1 %id)
BX091463 eye, retina .a 2078 to 2730 666 to 14   AAA Submitted on the opposite strand 653/653
(100 %)
0 diff
(100 %id)
DB319451 lung .a 2106 to 2662 558 to 1       558/558
(100 %)
1 diff
(99.9 %id)
DR423206 eye, Pterygium .a 2139 to 2725 587 to 1     Submitted on the opposite strand 587/587
(100 %)
9 diff
(98.5 %id)
BM547276 ovary (pool of 3) .a 2153 to 3121 1 to 970   tiling clone,   970/975
(99 %)
10 diff
(99.0 %id)
T55756 fetal spleen, Spleen .a 2188 to 2541 1 to 369       369/375
(98 %)
12 diff
(96.8 %id)
BM693082 eye, Retina Foveal and Macular .a 2193 to 2662 495 to 26   AAA Submitted on the opposite strand 470/470
(100 %)
0 diff
(100 %id)
DB569641 hypothalamus .a 2215 to 2730 1 to 516     Submitted on the opposite strand 516/516
(100 %)
4 diff
(99.3 %id)
AI350107 carcinoid, lung .a 2233 to 2663 431 to 1       431/431
(100 %)
4 diff
(99.1 %id)
BM690743 eye, Retina Foveal and Macular .a 2270 to 2809 589 to 50   AAA Submitted on the opposite strand 540/540
(100 %)
5 diff
(99.1 %id)
W16558 lung .a 2284 to 2660 375 to 1     Submitted on the opposite strand 375/375
(100 %)
2 diff
(99.5 %id)
W16555 lung .a 2299 to 2660 362 to 1     Submitted on the opposite strand 362/362
(100 %)
0 diff
(100 %id)
BE715826 head_neck .a 2364 to 2728 1 to 366       366/385
(95 %)
6 diff
(98.5 %id)
BE715859 head_neck .a 2370 to 2726 369 to 12       358/389
(92 %)
0 diff
(100 %id)
AA825270 carcinoid, lung .a 2383 to 2783 401 to 1       401/401
(100 %)
0 diff
(100 %id)
DA096098 cerebellum .a 2389 to 2870 2 to 484   capped   483/483
(100 %)
1 diff
(99.8 %id)
H86876 eye, retina .a 2406 to 2732 333 to 1     Submitted on the opposite strand 333/333
(100 %)
6 diff
(98.2 %id)
AA853812 Bone, Hip .a 2501 to 2627 18 to 144       127/144
(88 %)
6 diff
(95.9 %id)
AA853813 Bone, Hip .a 2501 to 2734 238 to 5       234/255
(91 %)
0 diff
(100 %id)
DB540754 hippocampus .a 2628 to 3119 1 to 492     Submitted on the opposite strand 492/492
(100 %)
3 diff
(99.4 %id)
BF967749 brain, hypothalamus .a 2655 to 3065 415 to 5       411/1058
(38 %)
0 diff
(100 %id)
T55714 fetal spleen, Spleen .a 2706 to 3118 421 to 1       421/514
(81 %)
23 diff
(95.6 %id)
AI478981 B-cell, chronic lymphotic leukemia .a 2861 to 3289 1 to 429   tiling clone, Submitted on the opposite strand 429/429
(100 %)
0 diff
(100 %id)
EB360779 eye, lens .a 3042 to 3107 65 to 1       65/65
(100 %)
1 diff
(98.5 %id)
BE839439 prostate_normal .a 3163 to 3521 19 to 377       359/377
(95 %)
6 diff
(98.5 %id)
DB202683 trachea .a 3198 to 3771 2 to 575   tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
DA772096 brain .a 3388 to 3912 2 to 526   tiling clone, capped   525/525
(100 %)
0 diff
(100 %id)
BF727142 eye, lens .b 1 to 515 1 to 515 exact tiling clone,   515/515
(100 %)
3 diff
(99.5 %id)
CD676022 eye, lens .b 1 to 619 1 to 619 exact tiling clone,   619/619
(100 %)
4 diff
(99.4 %id)
AW340546 pooled .b 510 to 939 429 to 1   tiling clone,   429/429
(100 %)
6 diff
(98.7 %id)
AI161086 uterus .c 1 to 496 496 to 1 P15L tiling clone,   496/496
(100 %)
11 diff
(97.8 %id)
AI149235 uterus .c 24 to 478 455 to 1   tiling clone,   455/455
(100 %)
1 diff
(99.8 %id)
AI161084 uterus .c 38 to 468 431 to 1       431/431
(100 %)
1 diff
(99.8 %id)
AW007772 thymus, pooled .d 1 to 491 491 to 1 exact tiling clone,   491/491
(100 %)
0 diff
(100 %id)
AV693733 hepatocellular carcinoma Gene HS3ST1, variant not shown         Suspected internal deletion, this clone was ignored    
DA096581 cerebellum Gene HS3ST1, variant not shown       capped Suspected internal deletion, this clone was ignored    
AW137922   Gene HS3ST1, variant not shown         Suspected internal deletion, this clone was ignored    
BF447174 Prostate Gene HS3ST1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
TI_153989996   Gene HS3ST1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C