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Gene HOXA13TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
46 supporting clones for gene HOXA13 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AW364757 denis_drash .a 4209 to 4651 442 to 1       442/442
(100 %)
1 diff
(99.8 %id)
AW376871 colon .a 4382 to 4922 541 to 1       541/542
(99 %)
6 diff
(98.9 %id)
AW377039 colon .a 4126 to 4658 1 to 535       535/535
(100 %)
12 diff
(97.8 %id)
BC075791 Placenta, normal .a 1 to 2436 1 to 2436 G109V tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 2436/2437
(99 %)
4 diff
(99.9 %id)
BG954125 colon .a 1464 to 1862 11 to 410       400/410
(97 %)
6 diff
(98.6 %id)
BG979660 colon_normal .a 1510 to 1750 250 to 2       249/271
(91 %)
0 diff
(100 %id)
BX119246 Prostate .a 1311 to 1707 1 to 397       397/397
(100 %)
0 diff
(100 %id)
CR737983 placenta .a 4043 to 4397 1 to 358       358/359
(99 %)
8 diff
(97.8 %id)
BX439546 placenta .a 3371 to 4260 1 to 890   tiling clone,   890/890
(100 %)
0 diff
(100 %id)
AL597666   .a 2362 to 2712 1 to 348   tiling clone,   348/348
(100 %)
4 diff
(98.9 %id)
R33638 placenta .a 4781 to 5016 244 to 7       238/244
(97 %)
0 diff
(100 %id)
R33750 placenta .a 3753 to 4095 1 to 349       349/351
(99 %)
16 diff
(95.5 %id)
R80259 placenta .a 4804 to 5004 212 to 1   fully sequenced,   212/212
(100 %)
0 diff
(100 %id)
R80374 placenta .a 4425 to 4834 1 to 419   fully sequenced,   419/419
(100 %)
9 diff
(97.9 %id)
AA088239 colon, tumor .a 4091 to 4329 242 to 1       242/242
(100 %)
6 diff
(97.6 %id)
AA088289 colon, tumor .a 3403 to 3802 1 to 410       410/414
(99 %)
18 diff
(95.7 %id)
AA088276 colon, tumor .a 3389 to 3811 426 to 1   fully sequenced,   426/426
(100 %)
3 diff
(99.3 %id)
AA088393 colon, tumor .a 3071 to 3419 1 to 352   tiling clone, fully sequenced,   352/352
(100 %)
3 diff
(99.2 %id)
AA147224 Pancreas .a 2082 to 2408 333 to 1       333/341
(97 %)
22 diff
(93.6 %id)
AA160421 Pancreas .a 669 to 1070 1 to 405       405/406
(99 %)
10 diff
(97.6 %id)
AA595017 normal prostate, Prostate .a 2826 to 3195 372 to 3       370/372
(99 %)
0 diff
(100 %id)
AA687604 normal prostate, Prostate .a 3367 to 3802 450 to 15   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 436/444
(98 %)
5 diff
(98.9 %id)
AI080175 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3387 to 3829 443 to 1       443/443
(100 %)
0 diff
(100 %id)
AI800530 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1973 to 2402 431 to 2       430/431
(99 %)
0 diff
(100 %id)
AI659273 Prostate .a 4436 to 5021 586 to 1       586/586
(100 %)
0 diff
(100 %id)
AI680621 Prostate .a 2059 to 2401 343 to 1       343/343
(100 %)
1 diff
(99.8 %id)
AI680626 Prostate .a 1943 to 2398 456 to 1       456/456
(100 %)
1 diff
(99.8 %id)
AI695522 colon .a 4609 to 5024 416 to 1   tiling clone,   416/416
(100 %)
0 diff
(100 %id)
BF589601 Prostate .a 3496 to 3925 430 to 1       430/430
(100 %)
0 diff
(100 %id)
BF439639 pooled .a 3456 to 3810 355 to 1       355/355
(100 %)
8 diff
(97.8 %id)
BF055200 pooled .a 4532 to 5021 501 to 12   AAA   490/495
(98 %)
0 diff
(100 %id)
BF221789 Prostate .a 3496 to 3925 430 to 1       430/430
(100 %)
0 diff
(100 %id)
BE784076 eye, retinoblastoma .a 1067 to 1778 1 to 712       712/712
(100 %)
3 diff
(99.6 %id)
BF107005 placenta .a 2569 to 3188 1 to 617       617/795
(77 %)
26 diff
(96.8 %id)
BC016712 Bone marrow, acute myelogenous leukemia .a 1039 to 2514 1 to 1475   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 1475/1476
(99 %)
5 diff
(99.7 %id)
BF242677 bone marrow, from acute myelogenous leukemia .a 1042 to 1704 1 to 669   available from MGC,   669/920
(72 %)
43 diff
(95.4 %id)
BF793608 adrenal cortex carcinoma, cell line, adrenal gland .a 1381 to 2253 1 to 869       869/1015
(85 %)
37 diff
(96.4 %id)
BG259921 bladder, transitional cell papilloma, cell line .a 2634 to 3440 1 to 806   tiling clone,   806/1119
(72 %)
42 diff
(96.3 %id)
BG260781 bladder, transitional cell papilloma, cell line .a 4123 to 4872 1 to 750   tiling clone,   750/977
(76 %)
13 diff
(98.7 %id)
BC046515 Bladder, transitional cell papilloma .a 3019 to 3195 1 to 177   available from MGC,   177/227
(77 %)
1 diff
(99.6 %id)
BG289306 bladder, transitional cell papilloma, cell line .a 1870 to 2398 1 to 526   AAA   526/526
(100 %)
4 diff
(99.3 %id)
BQ006804 Chondrosarcoma, Left Pelvis .a 3220 to 3990 774 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 756/756
(100 %)
23 diff
(97.0 %id)
CB129050 Liver .a 1384 to 2030 1 to 647       647/647
(100 %)
1 diff
(99.9 %id)
NM_000522.4   .a 1 to 2514 1 to 2514 exact RefSeq,   2514/2514
(100 %)
0 diff
(100 %id)
TI_157608684   .a 270 to 773 59 to 561   tiling clone, Submitted on the opposite strand 503/974
(51 %)
7 diff
(99.3 %id)
BQ022146 placenta .a 4647 to 5021 392 to 18   AAA   375/377
(99 %)
5 diff
(98.7 %id)
BQ025175 placenta .a 4425 to 5021 615 to 19   AAA   597/613
(97 %)
0 diff
(100 %id)
BQ022936 placenta .a 1905 to 2398 512 to 19   AAA   494/494
(100 %)
1 diff
(99.8 %id)
BQ024387 placenta .a 4606 to 5021 434 to 19   AAA   416/416
(100 %)
0 diff
(100 %id)
BQ022750 placenta .a 4678 to 5021 362 to 19   AAA   344/344
(100 %)
0 diff
(100 %id)
BU617759 Bone, Subchondral Bone .a 4415 to 5021 624 to 19   AAA   606/615
(98 %)
1 diff
(99.9 %id)
BG260781 bladder, transitional cell papilloma, cell line .a 4123 to 4872 1 to 750   tiling clone,   750/977
(76 %)
13 diff
(98.7 %id)
BC046515 Bladder, transitional cell papilloma .a 3019 to 3195 1 to 177   available from MGC,   177/227
(77 %)
1 diff
(99.6 %id)
BG289306 IMAGE:4516421 HOXA13.aAug10 2398 526 IMAGE:4516421     526 4
BG289306 IMAGE:4516421 HOXA13.aAug10 2398 526 IMAGE:4516421     526 4
BQ006804 IMAGE:5846299 HOXA13.aAug10 3990 19 IMAGE:5846299   Anomalous_clone 756 23
BQ006804 IMAGE:5846299 HOXA13.aAug10 3990 19 IMAGE:5846299   Anomalous_clone 756 23
CB129050 L11SNU354-3-B11 HOXA13.aAug10 2030 647 L11SNU354-3-B11     647 1
NM_000522.4 NM_000522 HOXA13.aAug10 2514 2514 NM_000522     2514 0
TI_157608684 TI_157608684 HOXA13.aAug10 773 561 TI_157608684 Inverted   503 7
BQ022146 UI-1-BB1p-ajz-b-09-0-UI HOXA13.aAug10 5021 18 UI-1-BB1p-ajz-b-09-0-UI     375 5
BQ025175 UI-1-BB1p-atu-g-06-0-UI HOXA13.aAug10 5021 19 UI-1-BB1p-atu-g-06-0-UI     597 0
BQ022936 UI-1-BB1p-aue-d-05-0-UI HOXA13.aAug10 2398 19 UI-1-BB1p-aue-d-05-0-UI     494 1
BQ024387 UI-1-BB1p-auq-a-12-0-UI HOXA13.aAug10 5021 19 UI-1-BB1p-auq-a-12-0-UI     416 0
BQ022750 UI-1-BB1p-axs-c-03-0-UI HOXA13.aAug10 5021 19 UI-1-BB1p-axs-c-03-0-UI     344 0
BU617759 UI-H-DF0-bew-i-09-0-UI HOXA13.aAug10 5021 19 UI-H-DF0-bew-i-09-0-UI     606 1
BU617759 UI-H-DF0-bew-i-09-0-UI HOXA13.aAug10 5021 19 UI-H-DF0-bew-i-09-0-UI     606 1
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DCI