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Gene GABRA1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
276 supporting clones for gene GABRA1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA325450 brain, cerebellum .g 2392 to 2698 1 to 308       308/308
(100 %)
1 diff
(99.7 %id)
BP193440 brain .f 237 to 818 1 to 581       581/581
(100 %)
5 diff
(99.2 %id)
AK223447 cerebrum .g 227 to 1927 1 to 1701 Y26C tiling clone,   1701/1701
(100 %)
3 diff
(99.9 %id)
AK289792 brain .g 1 to 2082 2 to 2083 K353E tiling clone,   2083/2083
(100 %)
1 diff
(100.0 %id)
BP201079 amygdala .f 334 to 845 1 to 512       512/574
(89 %)
24 diff
(95.9 %id)
BP201113 amygdala .f 334 to 915 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AW964889   .g 2418 to 2896 1 to 489   tiling clone,   489/570
(85 %)
19 diff
(96.7 %id)
BC030696 Brain, hippocampus .e 34 to 3446 11 to 3423 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 3413/3414
(99 %)
3 diff
(100.0 %id)
DA058971 cerebellum .g 235 to 793 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA060457 cerebellum .i 277 to 844 2 to 569   tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
DA062654 cerebellum .g 59 to 622 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DC303251 cerebellum .f 367 to 934 1 to 568       568/568
(100 %)
0 diff
(100 %id)
DA064293 cerebellum .e 46 to 614 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA066418 cerebellum .g 220 to 784 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DC303766 cerebellum .e 23 to 597 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
DA069326 cerebellum .g 298 to 872 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA073315 cerebellum .g 365 to 922 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA075784 cerebellum .f 149 to 718 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA077206 cerebellum .g 366 to 924 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DC304962 cerebellum .d 191 to 767 1 to 577   tiling clone,   577/577
(100 %)
1 diff
(99.9 %id)
DA083066 cerebellum .g 353 to 934 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA083287 cerebellum .f 368 to 793 2 to 427   capped   426/473
(90 %)
1 diff
(99.8 %id)
DA084415 cerebellum .g 393 to 944 2 to 553   capped   552/560
(98 %)
1 diff
(99.9 %id)
DA086758 cerebellum .g 298 to 866 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA087700 cerebellum .i 1 to 575 2 to 576   tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
DA087751 cerebellum .f 157 to 714 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA088192 cerebellum .g 34 to 579 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DC306226 cerebellum .d 1 to 583 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
DC306673 cerebellum .d 142 to 696 1 to 555       555/555
(100 %)
0 diff
(100 %id)
DA096515 cerebellum .g 358 to 910 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA096987 cerebellum .g 365 to 908 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA097495 cerebellum .g 363 to 922 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DC307259 cerebellum .e 1 to 547 1 to 547   tiling clone,   547/547
(100 %)
0 diff
(100 %id)
DC307273 cerebellum .d 148 to 681 1 to 534       534/534
(100 %)
0 diff
(100 %id)
DA107345 cerebellum .g 298 to 834 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DC308460 cerebellum .d 129 to 550 1 to 422       422/422
(100 %)
0 diff
(100 %id)
DC308533 cerebellum .d 143 to 731 1 to 589       589/589
(100 %)
2 diff
(99.7 %id)
DC308667 cerebellum .d 146 to 711 1 to 566       566/566
(100 %)
0 diff
(100 %id)
DA111657 cerebellum .f 233 to 770 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DC309000 cerebellum .d 142 to 688 1 to 547       547/547
(100 %)
1 diff
(99.9 %id)
DC309402 cerebellum .d 143 to 679 1 to 537       537/537
(100 %)
3 diff
(99.5 %id)
DA115643 cerebellum .g 365 to 942 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DC309547 cerebellum .h 1 to 566 1 to 566 N114D tiling clone,   566/566
(100 %)
1 diff
(99.9 %id)
DA117341 cerebellum .g 365 to 914 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA119189 cerebellum .g 365 to 908 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA119622 cerebellum .e 46 to 600 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA119800 cerebellum .g 298 to 852 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA119826 cerebellum .g 224 to 777 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DC309948 cerebellum .e 18 to 572 1 to 555       555/555
(100 %)
0 diff
(100 %id)
DA120284 cerebellum .e 37 to 591 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA121397 cerebellum .g 1122 to 1650 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DA121528 cerebellum .f 329 to 863 2 to 536   capped   535/535
(100 %)
6 diff
(98.9 %id)
DA121742 cerebellum .f 335 to 891 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA122738 cerebellum .e 29 to 569 2 to 543   capped   542/550
(98 %)
2 diff
(99.7 %id)
DC310431 cerebellum .f 379 to 917 1 to 540       540/540
(100 %)
3 diff
(99.5 %id)
DA124407 cerebellum .j-u 1 to 544 2 to 546 exact tiling clone, capped   545/546
(99 %)
2 diff
(99.7 %id)
DC310535 cerebellum .d 146 to 680 1 to 535       535/535
(100 %)
1 diff
(99.9 %id)
DA125713 cerebellum .g 363 to 928 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA128004 cerebellum .f 278 to 869 2 to 593   capped   592/592
(100 %)
2 diff
(99.7 %id)
DA128278 cerebellum .g 365 to 940 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA141398 alzheimer cortex .g 2433 to 2996 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA144999 amygdala .f 332 to 884 2 to 554   capped   553/553
(100 %)
4 diff
(99.3 %id)
DA146098 amygdala .f 307 to 869 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
DA157155 amygdala .f 335 to 828 2 to 495   capped   494/494
(100 %)
2 diff
(99.6 %id)
DC314435 amygdala .f 366 to 938 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DC314443 amygdala .f 341 to 907 1 to 567       567/572
(99 %)
3 diff
(99.5 %id)
DA163251 amygdala .f 175 to 708 2 to 538   capped   537/537
(100 %)
3 diff
(99.5 %id)
DA172697 amygdala .g 1533 to 1971 2 to 441   capped   440/440
(100 %)
1 diff
(99.8 %id)
DA187154 amygdala .g 753 to 1286 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DA190192 amygdala .g 213 to 679 2 to 469   capped   468/469
(99 %)
2 diff
(99.6 %id)
DA195290 amygdala .f 335 to 895 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA195656 amygdala .g 365 to 933 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA197431 brain .g 365 to 925 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA198997 brain .f 335 to 901 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA203618 brain .g 34 to 613 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA211186 brain .f 344 to 903 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DC320500 brain .d 129 to 678 1 to 550       550/550
(100 %)
0 diff
(100 %id)
DA211984 brain .g 298 to 829 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DA211988 brain .g 391 to 929 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA211994 brain .g 605 to 1146 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA212008 brain .f 233 to 767 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DC320595 brain .f 341 to 927 1 to 588       588/588
(100 %)
1 diff
(99.9 %id)
DA213891 brain .e 46 to 576 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DC320793 brain .d 146 to 686 1 to 541       541/541
(100 %)
1 diff
(99.9 %id)
DA215958 brain .f 245 to 797 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA216953 brain .f 180 to 720 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA216996 brain .f 165 to 710 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA217129 brain .g 353 to 896 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA217237 brain .f 233 to 769 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DA218647 brain .e 30 to 682 2 to 654   capped   653/653
(100 %)
0 diff
(100 %id)
DA219337 brain .f 238 to 786 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
DA219355 brain .f 245 to 803 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA219493 brain .g 216 to 698 2 to 484   capped   483/483
(100 %)
0 diff
(100 %id)
DA219752 brain .g 241 to 802 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA219812 brain .f 303 to 863 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DC321651 brain .f 335 to 905 1 to 571       571/571
(100 %)
0 diff
(100 %id)
DA222598 brain .g 790 to 1378 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA223679 brain .f 368 to 907 2 to 545   capped   544/551
(98 %)
9 diff
(98.4 %id)
DC322071 brain .d 118 to 732 1 to 615       615/615
(100 %)
2 diff
(99.7 %id)
DA224393 brain .f 176 to 731 2 to 558   capped   557/557
(100 %)
4 diff
(99.3 %id)
DC322239 brain .f 393 to 951 1 to 559       559/559
(100 %)
1 diff
(99.9 %id)
DA225582 brain .g 856 to 1508 2 to 654   capped   653/654
(99 %)
1 diff
(99.9 %id)
DA225845 brain .g 391 to 928 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DC322325 brain .d 143 to 691 1 to 549       549/554
(99 %)
2 diff
(99.7 %id)
DC322471 brain .d 129 to 694 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
DA228269 brain .f 179 to 745 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA228536 brain .g 600 to 1155 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DA228642 brain .f 245 to 813 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DA229487 brain .f 252 to 820 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA231172 brain .g 1 to 539 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA232066 brain .i 633 to 1203 2 to 572 exact tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DA232282 brain .f 193 to 763 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA234637 brain .g 245 to 833 2 to 590   capped   589/590
(99 %)
1 diff
(99.9 %id)
DC323561 brain .f 334 to 925 1 to 592       592/592
(100 %)
2 diff
(99.7 %id)
DC323635 brain .d 125 to 719 1 to 595       595/595
(100 %)
2 diff
(99.7 %id)
DA238033 brain .f 168 to 743 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA238037 brain .g 365 to 939 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DC324011 brain .d 111 to 707 1 to 597       597/597
(100 %)
0 diff
(100 %id)
DA238843 brain .g 228 to 821 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA239230 brain .g 436 to 1006 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
DC324254 brain .f 393 to 954 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DA241836 brain .f 363 to 801 2 to 438   capped   437/437
(100 %)
5 diff
(98.9 %id)
DC324517 brain .f 396 to 983 1 to 588       588/588
(100 %)
0 diff
(100 %id)
DC324542 brain .f 334 to 905 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DA243955 brain .g 365 to 960 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DA244811 brain .e 29 to 609 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA245509 brain .g 298 to 887 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA246170 brain .e 46 to 632 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DC325006 brain .f 362 to 954 1 to 593       593/600
(98 %)
2 diff
(99.7 %id)
DA247060 brain .g 244 to 842 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
DC325157 brain .f 378 to 946 1 to 569       569/570
(99 %)
1 diff
(99.9 %id)
DC325179 brain .a 1 to 591 1 to 593   tiling clone,   593/593
(100 %)
2 diff
(99.7 %id)
DA247858 brain .g 365 to 944 2 to 581   capped   580/586
(98 %)
3 diff
(99.5 %id)
DC325334 brain .d 144 to 719 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
DA248987 brain .f 229 to 804 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DC325404 brain .f 396 to 983 1 to 588       588/588
(100 %)
0 diff
(100 %id)
DA249391 brain .g 385 to 970 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
DA250062 brain .f 195 to 780 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DC325818 caudate nucleus .f 379 to 954 1 to 576       576/576
(100 %)
4 diff
(99.4 %id)
DA256823 caudate nucleus .g 83 to 648 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA269763 caudate nucleus .g 2441 to 2989 2 to 547   capped   546/546
(100 %)
3 diff
(99.5 %id)
DB306963 caudate nucleus .g 3821 to 4363 545 to 1   tiling clone,   545/545
(100 %)
3 diff
(99.5 %id)
DC329811 hippocampus .d 129 to 705 1 to 578       578/578
(100 %)
2 diff
(99.7 %id)
DA291605 hippocampus .g 288 to 873 2 to 586   capped   585/585
(100 %)
2 diff
(99.7 %id)
DA299469 hippocampus .g 245 to 810 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA305244 hippocampus .g 1640 to 2222 2 to 585   capped   584/584
(100 %)
3 diff
(99.5 %id)
DA309432 hippocampus .g 2045 to 2521 2 to 478   capped   477/477
(100 %)
1 diff
(99.8 %id)
DC332229 hippocampus .f 334 to 906 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DC332342 hippocampus .d 144 to 725 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA314667 hippocampus .g 224 to 784 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA315069 hippocampus .f 238 to 811 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DC333115 hippocampus .d 186 to 758 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DA318260 hippocampus .g 242 to 799 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
DC333356 hippocampus .f 337 to 905 1 to 570       570/570
(100 %)
1 diff
(99.9 %id)
DC333415 hippocampus .g 208 to 768 1 to 564       564/564
(100 %)
8 diff
(98.6 %id)
DC333459 hippocampus .f 375 to 932 1 to 558       558/558
(100 %)
0 diff
(100 %id)
DA321045 hippocampus .g 353 to 873 2 to 526   capped   525/525
(100 %)
4 diff
(99.3 %id)
DC333618 hippocampus .f 378 to 929 1 to 552       552/552
(100 %)
0 diff
(100 %id)
DC333630 hippocampus .d 106 to 655 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
DA323488 hippocampus .g 242 to 804 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DA324826 hippocampus .g 232 to 719 2 to 489   capped   488/488
(100 %)
1 diff
(99.8 %id)
DC334132 hippocampus .f 367 to 915 1 to 549       549/549
(100 %)
0 diff
(100 %id)
DC334326 hippocampus .e 21 to 480 1 to 461       461/461
(100 %)
1 diff
(99.8 %id)
DA327387 hippocampus .f 335 to 894 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DC334666 hippocampus .f 398 to 929 1 to 532       532/532
(100 %)
0 diff
(100 %id)
DC334682 hippocampus .d 129 to 652 1 to 526       526/527
(99 %)
3 diff
(99.5 %id)
DC334834 hippocampus .d 101 to 662 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DA331487 hippocampus .g 83 to 652 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DC335563 hippocampus .g 212 to 808 1 to 597       597/597
(100 %)
1 diff
(99.9 %id)
DC336039 hippocampus .f 333 to 917 1 to 586       586/586
(100 %)
5 diff
(99.2 %id)
DA339171 hippocampus .e 29 to 617 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA339841 hippocampus .g 242 to 843 2 to 603   capped   602/602
(100 %)
1 diff
(99.9 %id)
DC337114 substantia nigra .f 341 to 907 1 to 569       569/571
(99 %)
3 diff
(99.5 %id)
DC338085 subthalamic nucleus .d 157 to 701 1 to 546       546/546
(100 %)
3 diff
(99.5 %id)
DA360945 subthalamic nucleus .g 2767 to 3319 2 to 554   tiling clone, capped   553/553
(100 %)
1 diff
(99.9 %id)
DA364152 subthalamic nucleus .g 296 to 858 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA369532 subthalamic nucleus .g 365 to 934 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DC341030 thalamus .d 172 to 753 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DC341039 thalamus .d 172 to 761 1 to 590       590/590
(100 %)
0 diff
(100 %id)
DA388080 thalamus .g 1555 to 2149 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DC341472 thalamus .e 23 to 605 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DC341913 thalamus .f 393 to 983 1 to 591   tiling clone,   591/591
(100 %)
1 diff
(99.9 %id)
DC341986 thalamus .f 334 to 932 1 to 599       599/599
(100 %)
2 diff
(99.7 %id)
DA397838 thalamus .e 41 to 631 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DC342679 thalamus .d 142 to 733 1 to 593       593/593
(100 %)
2 diff
(99.7 %id)
DA404043 thalamus .f 342 to 889 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA405930 thalamus .g 242 to 911 2 to 670   capped   669/669
(100 %)
4 diff
(99.5 %id)
DA408660 thalamus .g 391 to 949 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA408919 thalamus .g 1 to 654 2 to 654   capped   653/671
(97 %)
4 diff
(99.5 %id)
DC343465 thalamus .f 332 to 979 1 to 647       647/647
(100 %)
5 diff
(99.3 %id)
DA410018 thalamus .g 405 to 971 2 to 568   capped   567/567
(100 %)
3 diff
(99.5 %id)
DC343496 thalamus .d 172 to 496 1 to 325       325/325
(100 %)
1 diff
(99.7 %id)
DC343526 thalamus .d 182 to 732 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
DC343537 thalamus .d 182 to 749 1 to 569       569/569
(100 %)
2 diff
(99.7 %id)
DA411489 thalamus .g 28 to 577 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA412556 thalamus .g 83 to 624 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
DA412917 thalamus .f 233 to 768 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
DA413553 thalamus .g 245 to 799 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DC343957 thalamus .e 12 to 573 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DC343999 thalamus .d 129 to 691 1 to 563       563/571
(98 %)
1 diff
(99.9 %id)
DA415680 thalamus .f 335 to 903 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA416085 thalamus .g 83 to 629 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DC344165 thalamus .d 172 to 736 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
BX118577 whole brain .g 1887 to 2289 401 to 1       401/401
(100 %)
5 diff
(98.8 %id)
Z40095 brain, total brain .g 4194 to 4366 173 to 1   tiling clone,   173/173
(100 %)
0 diff
(100 %id)
Z44058 brain, total brain .g 2709 to 3026 1 to 318       318/318
(100 %)
1 diff
(99.7 %id)
Z40687 brain, total brain .g 3511 to 3822 312 to 1   tiling clone,   312/312
(100 %)
0 diff
(100 %id)
Z44933 brain, total brain .g 2625 to 2862 1 to 238       238/238
(100 %)
0 diff
(100 %id)
F03552 brain, total brain .f 2032 to 2317 286 to 1   tiling clone,   286/286
(100 %)
0 diff
(100 %id)
F07280 brain, total brain .f 242 to 484 1 to 243       243/243
(100 %)
0 diff
(100 %id)
BP212960 cerebrum .f 367 to 944 1 to 578       578/578
(100 %)
3 diff
(99.5 %id)
BP213516 cerebrum .f 367 to 935 1 to 569       569/569
(100 %)
3 diff
(99.5 %id)
BP213989 cerebrum .g 244 to 821 1 to 578       578/578
(100 %)
3 diff
(99.5 %id)
BP219434 caudate nucleus .f 332 to 915 1 to 584       584/584
(100 %)
4 diff
(99.4 %id)
BP219466 caudate nucleus .f 332 to 844 1 to 515       515/552
(93 %)
22 diff
(96.1 %id)
BX508303   .g 1830 to 2464 39 to 671       633/671
(94 %)
6 diff
(99.2 %id)
AL119816 amygdala .g 367 to 796 1 to 430       430/430
(100 %)
4 diff
(99.1 %id)
DT217486 brain .g 2697 to 3334 1 to 638   tiling clone,   638/638
(100 %)
2 diff
(99.7 %id)
DA528258 brain .g 1601 to 2212 2 to 614   capped   613/613
(100 %)
2 diff
(99.7 %id)
DB464182 hippocampus .e 32 to 497 1 to 466       466/466
(100 %)
3 diff
(99.4 %id)
DB465204 hippocampus .g 82 to 518 1 to 437       437/437
(100 %)
1 diff
(99.8 %id)
DB467556 hippocampus .f 174 to 609 1 to 438       438/438
(100 %)
10 diff
(97.8 %id)
DB469740 hippocampus .g 212 to 595 1 to 382       382/382
(100 %)
9 diff
(97.7 %id)
DB469882 hippocampus .e 32 to 486 1 to 455       455/455
(100 %)
5 diff
(99.0 %id)
DB473762 hippocampus .e 32 to 488 1 to 457       457/457
(100 %)
1 diff
(99.8 %id)
DB476795 hippocampus .e 32 to 517 1 to 486       486/486
(100 %)
2 diff
(99.6 %id)
DB477002 hippocampus .g 946 to 1454 1 to 509       509/509
(100 %)
0 diff
(100 %id)
DB478410 hippocampus .f 396 to 862 1 to 467       467/467
(100 %)
0 diff
(100 %id)
DB479149 hippocampus .f 172 to 688 1 to 517       517/517
(100 %)
3 diff
(99.5 %id)
DB479354 hippocampus .f 174 to 643 1 to 470       470/470
(100 %)
0 diff
(100 %id)
DB480765 hippocampus .e 32 to 535 1 to 504       504/505
(99 %)
4 diff
(99.3 %id)
DB483329 hippocampus .f 1 to 457 6 to 461   tiling clone,   461/461
(100 %)
3 diff
(99.4 %id)
DB485936 hypothalamus .c 1 to 420 1 to 420       420/421
(99 %)
6 diff
(98.6 %id)
DB487114 hypothalamus .c 1 to 430 1 to 431   tiling clone,   431/432
(99 %)
4 diff
(99.1 %id)
DB490542 hypothalamus .c 1 to 406 1 to 406       406/406
(100 %)
4 diff
(99.1 %id)
AV720972 hypothalamus .b 1 to 416 1 to 407   tiling clone,   407/407
(100 %)
5 diff
(98.8 %id)
AV722519 hypothalamus .g 1612 to 2047 1 to 432       432/437
(98 %)
7 diff
(98.4 %id)
AV728194 hypothalamus .g 1917 to 2405 1 to 489   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 489/489
(100 %)
3 diff
(99.4 %id)
R25530 whole brain .e 51 to 492 1 to 450       450/454
(99 %)
13 diff
(97.2 %id)
R45589 whole brain .e 1498 to 1899 423 to 11   AAA   413/427
(96 %)
19 diff
(95.6 %id)
R35394 whole brain .g 2626 to 2993 1 to 376       376/378
(99 %)
14 diff
(96.3 %id)
R52300 whole brain .g 531 to 893 1 to 363       363/363
(100 %)
2 diff
(99.5 %id)
R60404 whole brain .g 540 to 915 1 to 382       382/382
(100 %)
7 diff
(98.2 %id)
H10841.
matches multiple genes
whole brain .g 1854 to 2119 287 to 22   AAA also hits gene WDR37andNCRNA00200 266/330
(80 %)
0 diff
(100 %id)
H10884 whole brain .g 571 to 1029 1 to 465       465/489
(95 %)
13 diff
(97.4 %id)
AA776176 schizophrenic brain S-11 frontal lobe .g 850 to 1313 1 to 464     Submitted on the opposite strand 464/464
(100 %)
5 diff
(99.0 %id)
AW005315 anaplastic oligodendroglioma, brain .g 1816 to 2405 590 to 1       590/590
(100 %)
2 diff
(99.7 %id)
BG704691 brain, hippocampus .e 24 to 658 1 to 642       642/729
(88 %)
17 diff
(97.7 %id)
BI752313 brain .g 2341 to 2402 747 to 805       689/819
(84 %)
34 diff
(95.9 %id)
BI603335 brain, hypothalamus .d 137 to 918 1 to 790   tiling clone,   790/992
(79 %)
25 diff
(97.5 %id)
BI598994 brain, hypothalamus .c 2 to 612 7 to 612   tiling clone,   606/617
(98 %)
14 diff
(97.8 %id)
BM927274 brain .g 1759 to 2701 1 to 963   tiling clone,   963/1057
(91 %)
40 diff
(96.3 %id)
CK002884 brain/CNS, Human Brain - Cerebellar Cortex .g 988 to 1656 1 to 664       664/666
(99 %)
8 diff
(98.8 %id)
TI_57219316   .g 1611 to 2223 79 to 704       626/902
(69 %)
20 diff
(97.8 %id)
TI_45210770   .d 142 to 918 173 to 957       785/1159
(67 %)
25 diff
(97.9 %id)
TI_45214936   .c 2 to 612 123 to 728       606/733
(82 %)
14 diff
(98.1 %id)
NM_000806.5   .g 1 to 4375 2 to 4376 exact RefSeq,   4376/4376
(100 %)
0 diff
(100 %id)
NM_001127643.1   .c 2 to 4264 1 to 4263 exact RefSeq,   4263/4263
(100 %)
0 diff
(100 %id)
NM_001127644.1   .f 148 to 4559 1 to 4412 exact RefSeq,   4412/4412
(100 %)
0 diff
(100 %id)
NM_001127645.1   .e 1 to 4000 1 to 4000 exact RefSeq,   4000/4000
(100 %)
0 diff
(100 %id)
NM_001127646.1   .b 1 to 4067 1 to 4067 exact RefSeq,   4067/4067
(100 %)
0 diff
(100 %id)
NM_001127647.1   .a 1 to 4223 1 to 4223 exact RefSeq,   4223/4223
(100 %)
0 diff
(100 %id)
NM_001127648.1   .d 101 to 4122 1 to 4022 exact RefSeq,   4022/4022
(100 %)
0 diff
(100 %id)
BP311311 brain .f 175 to 757 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BP346633 brain .f 334 to 916 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BP348789 brain .e 48 to 628 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BP350040 brain .e 48 to 629 1 to 584       584/584
(100 %)
4 diff
(99.4 %id)
DN989396 brain, whole brain .g 49 to 758 8 to 717       710/717
(99 %)
7 diff
(99.1 %id)
BP359883 thalamus .g 364 to 945 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP361506 thalamus .g 1 to 582 2 to 583       583/583
(100 %)
3 diff
(99.5 %id)
DB139791 thymus .f 365 to 900 2 to 538   capped   537/537
(100 %)
3 diff
(99.5 %id)
DB170627 kidney, tumor tissue .g 358 to 956 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
DB174114 kidney, tumor tissue .f 335 to 843 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DC412342 kidney, tumor tissue .e 22 to 572 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
DB177695 kidney, tumor tissue .g 2243 to 2792 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
X14766 brain .g 254 to 1994 1 to 1742 W122R     1742/1742
(100 %)
5 diff
(99.8 %id)
AV708951 adrenal gland .f 334 to 916 1 to 583   AAA Suspected internal deletion, this clone was ignored 583/583
(100 %)
1 diff
(99.9 %id)
AK295160 brain .e 48 to 628 1 to 581     Suspected internal deletion, this clone was ignored 581/581
(100 %)
1 diff
(99.9 %id)
DA214302 brain .e 48 to 629 1 to 584   capped Suspected internal deletion, this clone was ignored 584/584
(100 %)
4 diff
(99.4 %id)
DC325169 brain .g 49 to 758 8 to 717     Suspected internal deletion, this clone was ignored 710/717
(99 %)
7 diff
(99.1 %id)
X13584 cerebellum .g 49 to 758 8 to 717     Suspected internal deletion, this clone was ignored 710/717
(99 %)
7 diff
(99.1 %id)
BP359883 thalamus .g 364 to 945 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP361506 thalamus .g 1 to 582 2 to 583       583/583
(100 %)
3 diff
(99.5 %id)
DB139791 thymus .f 365 to 900 2 to 538   capped   537/537
(100 %)
3 diff
(99.5 %id)
DB170627 kidney, tumor tissue .g 358 to 956 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
DB174114 kidney, tumor tissue .f 335 to 843 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DC412342 kidney, tumor tissue .e 22 to 572 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
DB177695 kidney, tumor tissue .g 2243 to 2792 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
X14766 brain .g 254 to 1994 1 to 1742 W122R     1742/1742
(100 %)
5 diff
(99.8 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI