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Gene AFF2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
126 supporting clones for gene AFF2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AB102644   .e 480 to 4298 1 to 3819 exact tiling clone,   3819/3819
(100 %)
0 diff
(100 %id)
BP199152 brain .e 6689 to 7284 1 to 596       596/598
(99 %)
2 diff
(99.7 %id)
AJ001550 brain .e 480 to 4298 1 to 3819 exact     3819/3819
(100 %)
0 diff
(100 %id)
AK301927 testis .f 1 to 3018 2 to 3019 exact tiling clone,   3019/3019
(100 %)
1 diff
(100.0 %id)
AW605858 head_neck .b 1431 to 1809 391 to 14       379/393
(96 %)
1 diff
(99.8 %id)
AW975469   .e 8468 to 8689 222 to 1     Submitted on the opposite strand 222/314
(70 %)
0 diff
(100 %id)
BC132683 Cerebellum, Lung, PCR rescued clones .b 429 to 4455 1 to 4027 T1033M tiling clone,   4027/4027
(100 %)
1 diff
(100.0 %id)
BC143740 Cerebellum, Lung, PCR rescued clones .e 429 to 4368 1 to 3940 T1004M     3940/3940
(100 %)
1 diff
(100.0 %id)
BC143744 Cerebellum, Lung, PCR rescued clones .d 429 to 4380 1 to 3952 T1008M tiling clone,   3952/3952
(100 %)
1 diff
(100.0 %id)
TI_2194628744   .e 406 to 1479 66 to 1133       1068/1288
(82 %)
12 diff
(99.1 %id)
TI_2194629123   .e 3307 to 4375 1168 to 107       1062/1272
(83 %)
23 diff
(98.2 %id)
TI_2194629812   .e 406 to 1513 67 to 1166       1100/1277
(86 %)
19 diff
(98.6 %id)
TI_2194629824   .e 3361 to 4375 1138 to 116       1023/1301
(78 %)
17 diff
(98.7 %id)
TI_2194630020   .e 2082 to 3280 1 to 1195       1195/1291
(92 %)
26 diff
(98.0 %id)
TI_2194630021   .e 2364 to 3523 1 to 1173       1173/1370
(85 %)
32 diff
(97.7 %id)
TI_2194630022   .e 2700 to 3827 1 to 1140       1140/1245
(91 %)
37 diff
(97.1 %id)
TI_2194630023   .e 2921 to 3941 17 to 1038       1022/1271
(80 %)
27 diff
(97.9 %id)
TI_2194630024   .e 1046 to 2317 8 to 1279       1272/1293
(98 %)
52 diff
(96.0 %id)
TI_2194630025   .e 3254 to 4372 7 to 1139       1133/1212
(93 %)
45 diff
(96.3 %id)
TI_2194630026   .e 1364 to 2554 10 to 1210       1201/1298
(92 %)
31 diff
(97.7 %id)
TI_2194630027   .e 3668 to 4375 12 to 718       707/1290
(54 %)
8 diff
(99.4 %id)
TI_2194630028   .e 1553 to 2740 29 to 1221       1193/1299
(91 %)
24 diff
(98.2 %id)
TI_2194630029   .e 3781 to 4375 1 to 595       595/1286
(46 %)
8 diff
(99.4 %id)
TI_2194630030   .e 1719 to 2870 19 to 1170       1152/1298
(88 %)
17 diff
(98.7 %id)
TI_2194628746   .e 3325 to 4370 1124 to 89     Submitted on the opposite strand 1036/1285
(80 %)
23 diff
(98.3 %id)
TI_2194629125   .d 410 to 1451 85 to 1119   tiling clone, Submitted on the opposite strand 1035/1249
(82 %)
14 diff
(98.9 %id)
TI_2194629813   .e 3292 to 4370 1164 to 90     Submitted on the opposite strand 1075/1282
(83 %)
12 diff
(99.1 %id)
TI_2194629825   .d 410 to 1519 78 to 1171     Submitted on the opposite strand 1094/1257
(87 %)
28 diff
(97.8 %id)
TI_2194630034   .e 2361 to 3329 1 to 970       970/970
(100 %)
14 diff
(98.6 %id)
TI_2194630038   .e 2728 to 3772 15 to 1059       1045/1109
(94 %)
15 diff
(98.7 %id)
TI_2194630047   .e 1071 to 2194 25 to 1160       1136/1184
(95 %)
33 diff
(97.3 %id)
TI_2194630048   .e 3277 to 4101 19 to 844       826/844
(97 %)
7 diff
(99.2 %id)
TI_2194630053   .e 1385 to 2535 26 to 1178       1153/1182
(97 %)
25 diff
(97.9 %id)
TI_2194630054   .e 3667 to 4370 10 to 713       704/927
(75 %)
7 diff
(99.3 %id)
TI_2194630059   .e 1553 to 2628 30 to 1119       1090/1123
(97 %)
30 diff
(97.4 %id)
TI_2194630060   .e 3785 to 4370 4 to 590       587/967
(60 %)
7 diff
(99.3 %id)
TI_2194630065   .e 1760 to 2453 35 to 728       694/728
(95 %)
6 diff
(99.2 %id)
TI_2194630069   .e 2099 to 3009 17 to 927       911/929
(98 %)
10 diff
(99.0 %id)
TI_1752768886   .e 2158 to 2465 315 to 6       310/315
(98 %)
0 diff
(100 %id)
TI_1752768888   .e 1832 to 2190 361 to 2       360/361
(99 %)
17 diff
(95.3 %id)
TI_1752768890   .b 1571 to 1921 357 to 7       351/361
(97 %)
14 diff
(96.2 %id)
TI_1752768892   .e 1016 to 1361 359 to 13       347/359
(96 %)
0 diff
(100 %id)
TI_1752768894   .e 2758 to 3052 322 to 27       295/322
(91 %)
3 diff
(99.1 %id)
TI_1752768896   .e 2344 to 2695 359 to 6       354/359
(98 %)
0 diff
(100 %id)
TI_1752771420   .e 1761 to 2694 938 to 6       933/1305
(71 %)
2 diff
(99.9 %id)
TI_1752771422   .e 1913 to 3074 1145 to 2       1144/1270
(90 %)
14 diff
(98.9 %id)
TI_1752771426   .e 424 to 1375 957 to 3       955/1267
(75 %)
5 diff
(99.7 %id)
TI_1752771430   .b 1211 to 2276 1061 to 2       1060/1274
(83 %)
9 diff
(99.3 %id)
TI_1752771724   .e 410 to 1488 77 to 1143     Submitted on the opposite strand 1067/1248
(85 %)
26 diff
(98.0 %id)
BE935734 nervous_normal .e 3569 to 3866 1 to 299       299/299
(100 %)
1 diff
(99.7 %id)
BE935744 nervous_normal .e 3569 to 3866 1 to 297       297/297
(100 %)
1 diff
(99.7 %id)
BE935749 nervous_normal .e 3404 to 3520 1 to 117       117/117
(100 %)
8 diff
(93.2 %id)
BE935752 nervous_normal .e 3487 to 3604 118 to 1       118/118
(100 %)
0 diff
(100 %id)
BE935769 nervous_normal .e 3409 to 3936 5 to 532       528/536
(98 %)
12 diff
(97.8 %id)
BE935807 nervous_normal .e 3417 to 3836 16 to 436       421/456
(92 %)
25 diff
(94.6 %id)
BE935808 nervous_normal .e 3470 to 3768 318 to 22       299/324
(92 %)
11 diff
(96.7 %id)
BE935815 nervous_normal .e 3417 to 3952 9 to 547       539/547
(98 %)
16 diff
(97.1 %id)
BF803883 colon_ins .e 927 to 1149 1 to 224       224/236
(94 %)
12 diff
(95.0 %id)
BF900098 marrow .e 3622 to 3986 20 to 391       372/425
(87 %)
36 diff
(91.6 %id)
BF900103 marrow .e 3625 to 3975 1 to 353       353/353
(100 %)
10 diff
(97.2 %id)
BF902610 marrow .e 3927 to 4318 395 to 1     Submitted on the opposite strand 395/398
(99 %)
9 diff
(97.8 %id)
BF904449 marrow .e 7383 to 7716 334 to 3   tiling clone, Submitted on the opposite strand 332/334
(99 %)
0 diff
(100 %id)
BF905641 marrow .e 3943 to 4307 364 to 2     Submitted on the opposite strand 363/364
(99 %)
0 diff
(100 %id)
BF921650 nervous_tumor .e 956 to 1364 1 to 407       407/407
(100 %)
6 diff
(98.6 %id)
BF985357 placenta_normal .e 3707 to 4217 1 to 508       508/508
(100 %)
9 diff
(98.3 %id)
BF989830 placenta_normal .e 3783 to 4301 542 to 10       496/542
(91 %)
37 diff
(93.2 %id)
BG014277 placenta_normal .e 1753 to 2098 357 to 11       347/370
(93 %)
4 diff
(99.0 %id)
BI030785 marrow .e 1883 to 2087 205 to 1       205/205
(100 %)
7 diff
(96.6 %id)
BI030797 marrow .e 1571 to 2016 1 to 446       446/446
(100 %)
3 diff
(99.4 %id)
BI031235 marrow .e 2348 to 2705 62 to 419       358/419
(85 %)
6 diff
(98.6 %id)
DA063930 cerebellum .e 11294 to 11856 2 to 564   tiling clone, capped   563/563
(100 %)
3 diff
(99.5 %id)
DA092249 cerebellum .e 10022 to 10597 2 to 577   tiling clone, capped   576/576
(100 %)
2 diff
(99.7 %id)
DA102201 cerebellum .e 10187 to 10779 2 to 595   capped   594/594
(100 %)
2 diff
(99.7 %id)
DA145176 amygdala .e 11796 to 12371 2 to 577   tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
DA394015 thalamus .e 9347 to 9933 2 to 588   tiling clone, capped   587/587
(100 %)
0 diff
(100 %id)
DA400460 thalamus .e 1003 to 1495 2 to 494   capped   493/493
(100 %)
0 diff
(100 %id)
BX282280 germinal center B cell .e 6852 to 7350 1 to 501       501/502
(99 %)
6 diff
(98.9 %id)
F03405 brain, total brain .e 13323 to 13628 306 to 1       306/306
(100 %)
0 diff
(100 %id)
F08763 brain, total brain .e 11678 to 12017 1 to 340   tiling clone,   340/340
(100 %)
0 diff
(100 %id)
Z41797 brain, total brain .e 13304 to 13628 325 to 1   tiling clone,   325/325
(100 %)
0 diff
(100 %id)
CN315347 embryonic stem cells, cell lines H1, H7, andH9 .e 6888 to 7363 1 to 476       476/476
(100 %)
3 diff
(99.4 %id)
BX507775   .e 9417 to 9663 1 to 247       247/247
(100 %)
1 diff
(99.6 %id)
BX645031   .e 6699 to 7427 1 to 729   tiling clone,   729/729
(100 %)
0 diff
(100 %id)
DA488096 brain .e 11780 to 12335 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA497018 brain .e 10204 to 10777 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB457988 testis .i 1 to 496 1 to 497 G33E E34V tiling clone,   497/502
(99 %)
9 diff
(98.3 %id)
DB523487 testis .e 4028 to 4467 1 to 440     Submitted on the opposite strand 440/440
(100 %)
0 diff
(100 %id)
BQ635876 eye, retina .e 6240 to 6853 1 to 614   tiling clone,   614/614
(100 %)
0 diff
(100 %id)
M78417   .e 4153 to 4486 1 to 334   tiling clone,   334/334
(100 %)
0 diff
(100 %id)
H18241 brain .j-u 1 to 356 362 to 1 N5K M11X F14X I15Y L16P ... tiling clone,   362/378
(95 %)
8 diff
(97.9 %id)
AA641878 germinal center B cell .e 8477 to 8690 224 to 11   AAA   214/214
(100 %)
0 diff
(100 %id)
AA641922 germinal center B cell .e 6912 to 7356 1 to 445       445/445
(100 %)
0 diff
(100 %id)
AA688417 germinal center B cell .e 8478 to 8618 141 to 1       141/141
(100 %)
0 diff
(100 %id)
AA761284 germinal center B cell .e 8479 to 8690 238 to 28   AAA   211/212
(99 %)
3 diff
(98.6 %id)
AA765221 germinal center B cell .e 8478 to 8690 225 to 13   AAA   213/213
(100 %)
0 diff
(100 %id)
AA808138 germinal center B cell .e 2586 to 3085 503 to 4       500/503
(99 %)
5 diff
(99.1 %id)
AA909269 pooled .e 4053 to 4474 423 to 2       422/423
(99 %)
2 diff
(99.6 %id)
AI368687   .e 13179 to 13624 446 to 2   tiling clone,   445/446
(99 %)
0 diff
(100 %id)
AI962450 pooled germ cell tumors .e 8468 to 8690 223 to 1       223/224
(99 %)
0 diff
(100 %id)
AW183717 pooled .e 4054 to 4474 422 to 2       421/422
(99 %)
0 diff
(100 %id)
AW449457   .e 13195 to 13628 450 to 18   tiling clone, AAA   433/433
(100 %)
16 diff
(96.4 %id)
AW270082 pooled .e 3898 to 4474 576 to 2       577/576
(100 %)
15 diff
(97.4 %id)
AW341489 pooled .e 8467 to 8691 225 to 1   tiling clone,   225/225
(100 %)
0 diff
(100 %id)
AW662817 pooled .e 3988 to 4474 488 to 2       487/501
(97 %)
4 diff
(99.3 %id)
CF143008 lymph .e 2051 to 2530 489 to 8     Submitted on the opposite strand 482/489
(98 %)
0 diff
(100 %id)
BI755082 brain .e 10602 to 11375 1 to 775   tiling clone,   775/775
(100 %)
16 diff
(98.0 %id)
BU929158 placenta .e 4739 to 5522 1 to 783   tiling clone,   783/789
(99 %)
6 diff
(99.3 %id)
TI_57215999   .e 10602 to 11375 30 to 804       775/804
(96 %)
6 diff
(99.3 %id)
NM_002025.3   .a 1 to 13746 1 to 13746 exact RefSeq,   13746/13746
(100 %)
0 diff
(100 %id)
NM_001169122.1   .c 1 to 13641 1 to 13641 exact RefSeq,   13641/13641
(100 %)
0 diff
(100 %id)
NM_001169123.1   .b 1 to 13716 1 to 13716 exact RefSeq,   13716/13716
(100 %)
0 diff
(100 %id)
NM_001169124.1   .d 1 to 13641 1 to 13641 exact RefSeq,   13641/13641
(100 %)
0 diff
(100 %id)
NM_001169125.1   .e 1 to 13629 1 to 13629 exact RefSeq,   13629/13629
(100 %)
0 diff
(100 %id)
NM_001170628.1   .f 1 to 12279 2 to 12280 exact RefSeq,   12280/12280
(100 %)
0 diff
(100 %id)
DA789389 brain .e 10866 to 11434 2 to 570   tiling clone, capped   569/569
(100 %)
3 diff
(99.5 %id)
DA794995 brain .e 10387 to 10731 2 to 346   tiling clone, capped   345/345
(100 %)
1 diff
(99.8 %id)
DA796922 brain .e 10454 to 11001 2 to 549   tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
DR002107 fetal brain .e 343 to 1083 1 to 742   tiling clone,   742/742
(100 %)
5 diff
(99.4 %id)
DC396216 testis .f 1 to 569 2 to 570       570/573
(99 %)
2 diff
(99.7 %id)
DB055837 testis .h 1 to 548 2 to 549 exact tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
TI_154174231   .e 1919 to 2526 711 to 93     Submitted on the opposite strand 619/634
(97 %)
0 diff
(100 %id)
X95463 brain .g 1 to 1488 1 to 1487 R23A R24A R25A R26A L27W ... tiling clone,   1487/1487
(100 %)
2 diff
(99.9 %id)
AK311467 brain .f 1 to 569 2 to 570     Suspected internal deletion, this clone was ignored 570/573
(99 %)
2 diff
(99.7 %id)
TI_2194630042   .h 1 to 548 2 to 549   tiling clone, This clone was ignored 548/548
(100 %)
0 diff
(100 %id)
BE148505 head_neck .e 1919 to 2526 711 to 93     This clone was ignored 619/634
(97 %)
0 diff
(100 %id)
L76569 brain .g 1 to 1488 1 to 1487   tiling clone, This clone was ignored 1487/1487
(100 %)
2 diff
(99.9 %id)
DA793581 brain Gene AFF2, variant not shown       capped Suspected internal deletion, this clone was ignored    
U48436 brain; placenta Gene AFF2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC