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Gene CXCL3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
50 supporting clones for gene CXCL3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
T24494   .c 1220 to 1391 1 to 175   tiling clone,   175/175
(100 %)
1 diff
(99.5 %id)
AK307064 bladder .c 115 to 1300 1 to 1182       1182/1182
(100 %)
7 diff
(99.5 %id)
AK311367 lung .c 1 to 1641 1 to 1642 exact tiling clone,   1642/1642
(100 %)
3 diff
(99.9 %id)
BC016308 lung .a 118 to 1184 5 to 1071   available from MGC, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 1067/1068
(99 %)
3 diff
(99.8 %id)
BC065743 lung .a 118 to 1183 5 to 1070   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 1066/1067
(99 %)
1 diff
(100.0 %id)
DC301251 bladder .c 115 to 681 1 to 567       567/567
(100 %)
3 diff
(99.5 %id)
BQ320821 colon .e-u 1 to 264 9 to 269 P7R T8Q A9P P10R L11S ... tiling clone,   261/275
(94 %)
6 diff
(97.9 %id)
BX115250 carcinoid, lung .b 494 to 1163 686 to 17   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 670/675
(99 %)
0 diff
(100 %id)
CN263767 embryonic stem cells, cell lines H1, H7, andH9 .a 34 to 625 1 to 594       594/594
(100 %)
2 diff
(99.7 %id)
CR591181 HeLa cells Cot 25-normalized .a 135 to 1182 1 to 1048       1048/1048
(100 %)
0 diff
(100 %id)
BX352546   .b 283 to 1163 890 to 3       888/890
(99 %)
20 diff
(97.8 %id)
BX384694   .a 136 to 1031 1 to 896       896/924
(96 %)
24 diff
(97.5 %id)
BX390861   .b 594 to 1168 1 to 574       574/580
(98 %)
5 diff
(99.2 %id)
CV028919 mixed .a 196 to 518 1 to 323       323/504
(64 %)
1 diff
(99.9 %id)
DC358197 lung .c 1 to 295 1 to 295       295/295
(100 %)
0 diff
(100 %id)
N55413 multiple sclerosis lesions .c 1026 to 1160 1 to 135       135/135
(100 %)
2 diff
(98.6 %id)
AI829424 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 770 to 1052 283 to 1       283/283
(100 %)
0 diff
(100 %id)
AW079760 colon, moderately differentiated adenocarcinoma .b 646 to 1166 536 to 16   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 521/521
(100 %)
4 diff
(99.3 %id)
AW593590 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .b 821 to 1052 234 to 1       234/234
(100 %)
5 diff
(97.9 %id)
AW662891 pooled .c 833 to 1249 417 to 1       417/417
(100 %)
2 diff
(99.6 %id)
BG506634 lung .a 117 to 806 1 to 687       687/688
(99 %)
10 diff
(98.6 %id)
BG570617 lung .a 117 to 863 1 to 745       748/745
(100 %)
41 diff
(94.5 %id)
BG570567 lung .b 1 to 631 1 to 633 E99G L100T R101A C102L Q103P ... tiling clone,   633/634
(99 %)
5 diff
(99.3 %id)
BI832837 pooled pancreas and spleen .d 40 to 823 1 to 783 exact tiling clone,   783/783
(100 %)
1 diff
(99.9 %id)
BM128087 Islets of Langerhans, Pancreas .b 1029 to 1160 1 to 132       132/132
(100 %)
0 diff
(100 %id)
BM128099 Islets of Langerhans, Pancreas .b 1029 to 1160 1 to 132       132/132
(100 %)
0 diff
(100 %id)
BQ215959 large cell carcinoma, lung .a 156 to 1040 1 to 889       889/891
(99 %)
33 diff
(96.3 %id)
CD520079 pooled .b 281 to 959 1 to 691   tiling clone,   691/765
(90 %)
15 diff
(98.1 %id)
TI_57162505   .d 40 to 823 34 to 816 exact     783/816
(95 %)
7 diff
(99.2 %id)
CB129465 Liver .a 77 to 564 1 to 488       488/488
(100 %)
3 diff
(99.4 %id)
CB128389 Liver .a 117 to 594 1 to 478       478/478
(100 %)
1 diff
(99.8 %id)
M36821 lymphocyte and monocyte .a 120 to 1184 1 to 1064       1064/1064
(100 %)
8 diff
(99.3 %id)
NM_002090.2   .a 34 to 1184 1 to 1151   RefSeq, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 1151/1151
(100 %)
0 diff
(100 %id)
BM828712 Ascites, stomach .a 1 to 603 1 to 603 exact tiling clone,   603/603
(100 %)
1 diff
(99.9 %id)
T29169 blood, white blood cells .e-u 48 to 287 1 to 240   tiling clone,   240/240
(100 %)
1 diff
(99.6 %id)
TI_154089690   .c 697 to 1246 643 to 94   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 550/550
(100 %)
1 diff
(99.9 %id)
TI_159723297   .b 829 to 1166 414 to 78   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 337/1000
(33 %)
1 diff
(99.9 %id)
DC419238 stomach, tumor tissue .d 1 to 569 1 to 569 exact tiling clone,   569/569
(100 %)
0 diff
(100 %id)
DC419412 uterus, tumor tissue .c 119 to 686 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
CA314555 Human Lung Epithelial cells, lung .c 564 to 1246 701 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 683/683
(100 %)
1 diff
(99.9 %id)
CA944972 Human Lung Epithelial cells, lung .b 829 to 1166 355 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 337/346
(97 %)
1 diff
(99.8 %id)
CA433812 mixed .c 719 to 1246 546 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 528/528
(100 %)
1 diff
(99.9 %id)
BU626899 Alveolar Macrophage, lung .a 460 to 1184 740 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 722/722
(100 %)
2 diff
(99.8 %id)
CA748708 Alveolar Macrophage, lung .b 662 to 1163 524 to 23   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 502/505
(99 %)
0 diff
(100 %id)
CA309305 Alveolar Macrophage, lung .a 132 to 838 725 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 707/720
(98 %)
2 diff
(99.8 %id)
CA309555 Alveolar Macrophage, lung .b 495 to 1166 690 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 672/672
(100 %)
4 diff
(99.5 %id)
CD743042 Alveolar Macrophage, lung .a 460 to 1184 742 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 724/724
(100 %)
1 diff
(99.9 %id)
CD370075 Alveolar Macrophage, lung .b 366 to 1166 818 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 800/802
(99 %)
0 diff
(100 %id)
X53800   .a 162 to 1149 1 to 988       988/988
(100 %)
0 diff
(100 %id)
BF106374 lung .c 564 to 1246 701 to 19     This clone was ignored 683/683
(100 %)
1 diff
(99.9 %id)
CA944972 Human Lung Epithelial cells, lung .b 829 to 1166 355 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 337/346
(97 %)
1 diff
(99.8 %id)
CA944972 Human Lung Epithelial cells, lung .b 829 to 1166 355 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 337/346
(97 %)
1 diff
(99.8 %id)
CA433812 mixed .c 719 to 1246 546 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 528/528
(100 %)
1 diff
(99.9 %id)
BU626899 Alveolar Macrophage, lung .a 460 to 1184 740 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 722/722
(100 %)
2 diff
(99.8 %id)
BU626899 Alveolar Macrophage, lung .a 460 to 1184 740 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 722/722
(100 %)
2 diff
(99.8 %id)
CA748708 Alveolar Macrophage, lung .b 662 to 1163 524 to 23   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 502/505
(99 %)
0 diff
(100 %id)
CA748708 Alveolar Macrophage, lung .b 662 to 1163 524 to 23   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 502/505
(99 %)
0 diff
(100 %id)
CA309305 Alveolar Macrophage, lung .a 132 to 838 725 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 707/720
(98 %)
2 diff
(99.8 %id)
CA309305 Alveolar Macrophage, lung .a 132 to 838 725 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 707/720
(98 %)
2 diff
(99.8 %id)
CA309555 Alveolar Macrophage, lung .b 495 to 1166 690 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 672/672
(100 %)
4 diff
(99.5 %id)
CA309555 Alveolar Macrophage, lung .b 495 to 1166 690 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 672/672
(100 %)
4 diff
(99.5 %id)
CD743042 Alveolar Macrophage, lung .a 460 to 1184 742 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 724/724
(100 %)
1 diff
(99.9 %id)
CD743042 Alveolar Macrophage, lung .a 460 to 1184 742 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 724/724
(100 %)
1 diff
(99.9 %id)
CD370075 Alveolar Macrophage, lung .b 366 to 1166 818 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 800/802
(99 %)
0 diff
(100 %id)
CD370075 Alveolar Macrophage, lung .b 366 to 1166 818 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 800/802
(99 %)
0 diff
(100 %id)
X53800   .a 162 to 1149 1 to 988       988/988
(100 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI