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Gene BTBD9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
110 supporting clones for gene BTBD9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK057507 testis .d 1 to 1979 2 to 1980 I263V tiling clone, available from FLJ,   1980/1980
(100 %)
1 diff
(100.0 %id)
AK090930 amygdala .a 1297 to 3270 1 to 1974   tiling clone, available from FLJ,   1974/2131
(92 %)
7 diff
(99.7 %id)
AK126242 kidney, tumor tissue .a 5926 to 8748 1 to 2828   tiling clone, available from FLJ,   2828/2828
(100 %)
5 diff
(99.9 %id)
AL157476 amygdala .a 6611 to 8748 1 to 2143   available from DKFZ, AAA   2143/2143
(100 %)
5 diff
(99.8 %id)
AX746689   .a 1297 to 3270 1 to 1974       1974/2131
(92 %)
7 diff
(99.7 %id)
CB155203 brain .a 6499 to 6689 1 to 191       191/191
(100 %)
1 diff
(99.5 %id)
CB155212 brain .a 6499 to 7067 1 to 569       569/569
(100 %)
0 diff
(100 %id)
BC101354 PCR rescued clones .d 79 to 1977 1 to 1899 exact tiling clone,   1899/1899
(100 %)
0 diff
(100 %id)
BC101355 PCR rescued clones .d 79 to 1977 1 to 1899 exact     1899/1899
(100 %)
0 diff
(100 %id)
BC101357 PCR rescued clones .c 79 to 2112 1 to 2034 exact tiling clone,   2034/2034
(100 %)
0 diff
(100 %id)
BE077198 breast .a 1410 to 1821 64 to 475       412/477
(86 %)
12 diff
(97.5 %id)
BE176181 head_neck .a 3888 to 4212 325 to 2   tiling clone, Submitted on the opposite strand 324/335
(96 %)
0 diff
(100 %id)
BF352290 head_neck .a 3888 to 4202 315 to 2   tiling clone,   314/325
(96 %)
0 diff
(100 %id)
BI013701 lung_tumor .a 3331 to 3625 299 to 4       296/309
(95 %)
0 diff
(100 %id)
BI024981 marrow .a 6970 to 7173 206 to 7       200/216
(92 %)
0 diff
(100 %id)
DA052023   .a 266 to 774 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DA083687 cerebellum .a 6500 to 7072 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA155010 amygdala .a 6341 to 6875 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DA156767 amygdala .a 1298 to 1842 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
DB301956 amygdala .a 2885 to 3270 543 to 158       386/543
(71 %)
0 diff
(100 %id)
DA199789 brain .a 6538 to 7120 2 to 585   capped   584/584
(100 %)
3 diff
(99.5 %id)
DA342941 substantia nigra .a 6199 to 6694 2 to 497   capped   496/496
(100 %)
2 diff
(99.6 %id)
DA391209 thalamus .b 282 to 853 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
DB311804 thalamus .b 3362 to 3903 543 to 1   tiling clone,   543/543
(100 %)
2 diff
(99.7 %id)
DA404403 thalamus .a 254 to 844 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA408022 thalamus .a 5659 to 6196 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
BX109492 brain .a 7015 to 7434 1 to 421       421/422
(99 %)
3 diff
(99.3 %id)
BX114302 carcinoid, lung .a 5598 to 6219 1 to 622       622/622
(100 %)
4 diff
(99.4 %id)
BX279596 pooled .a 1817 to 2306 1 to 490       490/490
(100 %)
0 diff
(100 %id)
CD699465 normal nasopharynx .f 1 to 416 19 to 434 C2G R87G tiling clone,   416/434
(95 %)
11 diff
(97.5 %id)
CN344572 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 490 to 1290 1 to 802       802/802
(100 %)
3 diff
(99.7 %id)
CN344573 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 225 to 975 1 to 751   tiling clone,   751/751
(100 %)
1 diff
(99.9 %id)
CR596814 fetal brain .a 6755 to 8557 1 to 1803   tiling clone,   1803/1803
(100 %)
0 diff
(100 %id)
CR616810 Placenta Cot 25-normalized .a 1953 to 2677 1 to 725       725/725
(100 %)
0 diff
(100 %id)
AL538349 brain, fetal brain .a 6755 to 7737 1 to 982       982/985
(99 %)
9 diff
(99.1 %id)
AL567269 brain, fetal brain .a 7690 to 8716 1028 to 5       1024/1028
(99 %)
0 diff
(100 %id)
BX451662 brain, fetal brain .a 7643 to 8557 1 to 916       916/919
(99 %)
14 diff
(98.5 %id)
BX369858 Placenta Cot 25-normalized .a 2547 to 2677 1 to 129       129/134
(96 %)
3 diff
(97.8 %id)
BX377450 Placenta Cot 25-normalized .a 1953 to 2627 689 to 14       676/689
(98 %)
0 diff
(100 %id)
BX377451 Placenta Cot 25-normalized .a 1953 to 2677 1 to 726       726/726
(100 %)
1 diff
(99.9 %id)
BX476497   .a 3162 to 3635 17 to 490   tiling clone,   474/490
(96 %)
6 diff
(98.8 %id)
AL712082 human skeletal muscle .a 268 to 906 1 to 639       639/639
(100 %)
0 diff
(100 %id)
AL710366 human skeletal muscle .a 1904 to 2149 1 to 246       246/246
(100 %)
1 diff
(99.6 %id)
DA498095 brain .a 6205 to 6737 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA510391 brain .a 6101 to 6669 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
FN120986 breast carcinoma .a 5352 to 5407 55 to 1   tiling clone, Submitted on the opposite strand 55/55
(100 %)
1 diff
(98.2 %id)
D81010.
matches multiple genes
brain .a 8158 to 8525 1 to 367     also hits gene C14orf119 367/369
(99 %)
7 diff
(98.2 %id)
M78469   .a 4924 to 5297 376 to 1   tiling clone,   376/376
(100 %)
6 diff
(98.5 %id)
BP425831 small intestine .a 5115 to 5338 1 to 226   tiling clone, Submitted on the opposite strand 226/229
(98 %)
3 diff
(98.7 %id)
BP251773 hippocampus .a 796 to 1412 1 to 618   tiling clone,   618/624
(99 %)
2 diff
(99.7 %id)
H39093 brain .a 8343 to 8742 411 to 10       402/414
(97 %)
0 diff
(100 %id)
H39127 brain .a 7088 to 7430 1 to 344       344/345
(99 %)
5 diff
(98.6 %id)
H67071 nose, olfactory epithelium .a 5346 to 5592 1 to 247   tiling clone,   247/250
(98 %)
3 diff
(98.8 %id)
N98799 multiple sclerosis lesions .a 8198 to 8749 1 to 554       554/562
(98 %)
17 diff
(97.0 %id)
N53643 multiple sclerosis lesions .a 3723 to 3831 1 to 109   tiling clone,   109/109
(100 %)
0 diff
(100 %id)
AA894437 carcinoid, lung .a 5854 to 6221 380 to 13   AAA   368/368
(100 %)
2 diff
(99.5 %id)
AI732925 carcinoid, lung .a 5709 to 6221 525 to 13   AAA   513/513
(100 %)
0 diff
(100 %id)
AI791243 carcinoid, lung .a 5598 to 6033 1 to 436   tiling clone,   436/436
(100 %)
4 diff
(99.1 %id)
AI220033 pooled .a 8425 to 8747 323 to 1       323/323
(100 %)
1 diff
(99.7 %id)
AI197834 anaplastic oligodendroglioma, brain .a 8491 to 8748 279 to 22   AAA   258/258
(100 %)
1 diff
(99.7 %id)
AI266253 borderline ovarian carcinoma, ovary .a 5313 to 5561 1 to 254   tiling clone, AAA Submitted on the opposite strand 254/254
(100 %)
12 diff
(95.3 %id)
AI474779 Kidney .a 8425 to 8749 325 to 1       325/325
(100 %)
0 diff
(100 %id)
AI824328 carcinoid, lung .a 8339 to 8749 411 to 1   tiling clone,   411/411
(100 %)
0 diff
(100 %id)
AI700921 Kidney .a 8491 to 8748 272 to 15   AAA   258/258
(100 %)
0 diff
(100 %id)
AI650360 Kidney .a 5754 to 6235 497 to 16   AAA   482/482
(100 %)
2 diff
(99.6 %id)
AI984662 Kidney .a 5668 to 5871 204 to 1       204/204
(100 %)
0 diff
(100 %id)
AW182836 pooled .a 8268 to 8749 485 to 3       483/485
(99 %)
0 diff
(100 %id)
AW663945 pooled .a 1833 to 2045 214 to 1       214/229
(93 %)
9 diff
(96.1 %id)
CF137725 lymph .a 4748 to 5043 1 to 296   tiling clone,   296/296
(100 %)
8 diff
(97.3 %id)
BF448936 sympathetic trunk .a 8406 to 8749 345 to 2       344/345
(99 %)
0 diff
(100 %id)
BF681515 Prostate .a 5720 to 6232 1 to 516   AAA   516/516
(100 %)
9 diff
(98.3 %id)
BC035667 Brain, hippocampus .a 7033 to 8748 1 to 1720   available from MGC, AAA   1720/1720
(100 %)
6 diff
(99.7 %id)
BM805396 brain, hippocampus .a 7034 to 7445 18 to 427   available from MGC,   410/431
(95 %)
5 diff
(98.9 %id)
BM987784 mixed .a 8527 to 8755 245 to 17       229/247
(92 %)
0 diff
(100 %id)
BQ066330 lymph, lymphoma, cell line .a 4244 to 5007 1 to 776   tiling clone,   776/1043
(74 %)
23 diff
(97.8 %id)
BQ707777 Spleen .a 7457 to 8306 1 to 855       855/930
(91 %)
20 diff
(97.9 %id)
BC101356 PCR rescued clones .e 79 to 2046 1 to 1968 exact tiling clone,   1968/1968
(100 %)
0 diff
(100 %id)
DA622831 Kidney .a 353 to 947 2 to 596   capped   595/596
(99 %)
2 diff
(99.7 %id)
CB161778 Liver .a 6857 to 7385 1 to 528       528/528
(100 %)
1 diff
(99.9 %id)
NM_052893.1   .b 1 to 8948 1 to 8948 exact RefSeq, AAA   8948/8948
(100 %)
0 diff
(100 %id)
NM_152733.2   .d 1 to 8484 2 to 8485 exact RefSeq, AAA   8485/8485
(100 %)
0 diff
(100 %id)
NM_001099272.1   .a 1 to 8748 1 to 8748 exact RefSeq, AAA   8748/8748
(100 %)
0 diff
(100 %id)
NM_001172418.1   .c 1 to 8619 2 to 8620 exact RefSeq, AAA   8620/8620
(100 %)
0 diff
(100 %id)
BP311629 brain .a 254 to 836 1 to 582       582/582
(100 %)
12 diff
(98.0 %id)
DA804697 brain .a 5683 to 6242 2 to 561   capped   560/564
(99 %)
1 diff
(99.9 %id)
BM773375 stomach .a 8649 to 8748 1 to 100   AAA   100/100
(100 %)
0 diff
(100 %id)
DB025866 testis .e 1 to 613 2 to 614   tiling clone, capped   613/613
(100 %)
0 diff
(100 %id)
DB336532 testis .e 1461 to 2048 588 to 1   tiling clone,   588/588
(100 %)
1 diff
(99.9 %id)
DB095147 testis .a 349 to 900 39 to 590   capped   552/589
(93 %)
11 diff
(98.2 %id)
DB095510 testis .g 1 to 572 2 to 573   tiling clone, capped   572/572
(100 %)
2 diff
(99.7 %id)
DB149397 thymus .a 2804 to 3362 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
TI_149300760   .a 7884 to 8748 938 to 79   AAA   860/992
(86 %)
21 diff
(97.9 %id)
DB173928 kidney, tumor tissue .a 5927 to 6471 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
BM976766 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 8031 to 8748 736 to 19   AAA   718/718
(100 %)
6 diff
(99.2 %id)
CB243360 Human Lung Epithelial cells, lung .a 8086 to 8748 683 to 19   AAA   665/667
(99 %)
7 diff
(99.0 %id)
BM702303 eye, optic nerve .a 6753 to 7391 1 to 640       640/658
(97 %)
3 diff
(99.6 %id)
CA426362 cell lines, Chondrosarcoma .a 8121 to 8748 644 to 19   AAA   626/626
(100 %)
2 diff
(99.7 %id)
TI_151699998   .a 6755 to 7390 701 to 69       633/963
(65 %)
0 diff
(100 %id)
U23842 brain, frontal cortex .a 8649 to 8748 1 to 100     Suspected internal deletion, suspected internal deletion, this clone was ignored 100/100
(100 %)
0 diff
(100 %id)
AB067467 brain .e 1 to 613 2 to 614   tiling clone, available from KIAA, Suspected internal deletion, suspected internal deletion, suspected internal deletion, this clone was ignored 613/613
(100 %)
0 diff
(100 %id)
T23787   .e 1461 to 2048 588 to 1   tiling clone, This clone was ignored 588/588
(100 %)
1 diff
(99.9 %id)
BF985705 placenta_normal .a 349 to 900 39 to 590     This clone was ignored 552/589
(93 %)
11 diff
(98.2 %id)
DA398540 thalamus .g 1 to 572 2 to 573   tiling clone, capped Suspected internal deletion, suspected internal deletion, this clone was ignored 572/572
(100 %)
2 diff
(99.7 %id)
DB312037 thalamus .a 2804 to 3362 2 to 560     Suspected internal deletion, suspected internal deletion, this clone was ignored 559/559
(100 %)
1 diff
(99.9 %id)
BX537534 human retina .a 7884 to 8748 938 to 79   available from DKFZ, AAA Suspected internal deletion, suspected internal deletion, this clone was ignored 860/992
(86 %)
21 diff
(97.9 %id)
CN344571 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 5927 to 6471 2 to 547     This clone was ignored 546/546
(100 %)
1 diff
(99.9 %id)
BX353574 Neuroblastoma Cot 25-normalized .a 8031 to 8748 736 to 19     This clone was ignored 718/718
(100 %)
6 diff
(99.2 %id)
BX439447 placenta .a 8031 to 8748 736 to 19     This clone was ignored 718/718
(100 %)
6 diff
(99.2 %id)
BQ637641 eye, retina .a 8086 to 8748 683 to 19     This clone was ignored 665/667
(99 %)
7 diff
(99.0 %id)
T03771   .a 8086 to 8748 683 to 19     This clone was ignored 665/667
(99 %)
7 diff
(99.0 %id)
R51013 whole brain .a 6753 to 7391 1 to 640     This clone was ignored 640/658
(97 %)
3 diff
(99.6 %id)
R51121 whole brain .a 6753 to 7391 1 to 640     This clone was ignored 640/658
(97 %)
3 diff
(99.6 %id)
R51295 whole brain .a 8121 to 8748 644 to 19     This clone was ignored 626/626
(100 %)
2 diff
(99.7 %id)
R51406 whole brain .a 8121 to 8748 644 to 19     This clone was ignored 626/626
(100 %)
2 diff
(99.7 %id)
AA486863 lung .a 6755 to 7390 701 to 69   fully sequenced, This clone was ignored 633/963
(65 %)
0 diff
(100 %id)
AA486864 lung Gene BTBD9, variant not shown       fully sequenced, AAA This clone was ignored    
BQ001356 lung, Metastatic Chondrosarcoma Gene BTBD9, variant not shown       AAA Submitted on the opposite strand    
CA313423 Human Lung Epithelial cells, lung Gene BTBD9, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI