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Gene ATP2B4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
452 supporting clones for gene ATP2B4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX537444 human fetal kidney .a 1 to 8967 1 to 8967 S492C E1154G tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 8967/8967
(100 %)
16 diff
(99.9 %id)
AL706212 human skeletal muscle .a 241 to 981 1 to 742   tiling clone,   742/742
(100 %)
7 diff
(99.1 %id)
NM_001684.3   .a 241 to 8973 1 to 8733 exact RefSeq,   8733/8733
(100 %)
7 diff
(100.0 %id)
CN345801 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 262 to 988 1 to 728       728/728
(100 %)
7 diff
(99.1 %id)
CR936708 fetal kidney .a 274 to 8966 1 to 8691 V578G I579H R580Q N581E P582S ... AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 8691/8692
(99 %)
16 diff
(99.9 %id)
DA842067 placenta .a 274 to 711 2 to 439   capped   438/438
(100 %)
1 diff
(99.8 %id)
AL710577 human skeletal muscle .a 276 to 925 1 to 651       651/651
(100 %)
4 diff
(99.4 %id)
CR749393 cervix .a 298 to 8967 1 to 8669 E16G S576C tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 8669/8669
(100 %)
25 diff
(99.8 %id)
TI_1968230271   .a 556 to 1442 109 to 1002     Submitted on the opposite strand 894/1007
(88 %)
24 diff
(97.7 %id)
DN997129 breast cancer, Mammary gland (cancer tissue) .a 557 to 1253 1 to 698       698/698
(100 %)
5 diff
(99.3 %id)
DB095352 testis .a 716 to 1284 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
M25874   .a 728 to 5206 1 to 4479 exact tiling clone,   4479/4479
(100 %)
7 diff
(99.9 %id)
DB090781 testis .a 748 to 1317 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB099009 testis .a 766 to 1352 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DB444169 testis .a 871 to 1313 1 to 447       447/453
(98 %)
29 diff
(93.6 %id)
DB461063 testis .a 871 to 1348 1 to 478       478/478
(100 %)
5 diff
(99.0 %id)
AL698047 human skeletal muscle .a 873 to 1714 1 to 841       841/853
(98 %)
12 diff
(98.6 %id)
DB092898 testis .a 890 to 1441 2 to 553   tiling clone, capped   552/552
(100 %)
0 diff
(100 %id)
BF957479 nervous_normal .a 997 to 1311 318 to 1       318/349
(91 %)
15 diff
(95.8 %id)
BQ339808 nervous_normal .a 997 to 1315 339 to 18       322/370
(87 %)
0 diff
(100 %id)
TI_1968230827   .a 1037 to 2021 23 to 1008       986/1278
(77 %)
10 diff
(99.3 %id)
AI885833 anaplastic oligodendroglioma, brain .a 1250 to 2010 760 to 1       760/763
(99 %)
27 diff
(96.5 %id)
BF933381 nervous_tumor .a 1270 to 1647 392 to 13     Submitted on the opposite strand 380/392
(96 %)
13 diff
(96.7 %id)
BF933400 nervous_tumor .a 1271 to 1650 395 to 17     Submitted on the opposite strand 379/395
(95 %)
1 diff
(99.8 %id)
BQ014745 Chondrosarcoma, Left Pubic Bone .a 1316 to 2024 712 to 5   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 708/717
(98 %)
4 diff
(99.5 %id)
BF985985 placenta_normal .a 1393 to 1701 310 to 2   tiling clone,   309/310
(99 %)
2 diff
(99.4 %id)
AW999597 breast_normal .a 1406 to 1500 95 to 1     Submitted on the opposite strand 95/108
(87 %)
1 diff
(99.1 %id)
DB328479 placenta .a 1421 to 2010 591 to 1       591/591
(100 %)
3 diff
(99.5 %id)
AI356641 brain, glioblastoma (pooled) .a 1461 to 1965 505 to 1       505/505
(100 %)
22 diff
(95.7 %id)
AL603088 human skeletal muscle .a 1522 to 2182 1 to 661       661/661
(100 %)
3 diff
(99.6 %id)
AL603078 human skeletal muscle .a 1579 to 2224 1 to 646       646/646
(100 %)
0 diff
(100 %id)
AI383984 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1582 to 2001 420 to 1       420/420
(100 %)
0 diff
(100 %id)
AL706782 human skeletal muscle .a 1618 to 2265 1 to 648       648/648
(100 %)
1 diff
(99.9 %id)
BQ365566 placenta_normal .a 1636 to 1997 365 to 1       365/365
(100 %)
9 diff
(97.6 %id)
M78039   .a 1676 to 1927 252 to 1       252/252
(100 %)
0 diff
(100 %id)
BQ344486 nervous_tumor .a 1710 to 2025 329 to 12       318/329
(96 %)
0 diff
(100 %id)
FN097812 breast carcinoma .a 1800 to 1877 1 to 75       75/75
(100 %)
3 diff
(96.0 %id)
DQ201781 corneal epithelium .a 1975 to 2306 1 to 332       332/333
(99 %)
1 diff
(99.7 %id)
BX503964   .a 2053 to 2533 1 to 481       481/481
(100 %)
0 diff
(100 %id)
TI_1968230807   .a 2133 to 3389 16 to 1249       1160/1258
(92 %)
32 diff
(97.5 %id)
BP201990 amygdala .a 2226 to 2807 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BX489773   .a 2359 to 2938 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BP288896 lung .a 2810 to 3390 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BI047582 stomach .a 2818 to 3042 245 to 11       235/269
(87 %)
17 diff
(93.7 %id)
BE937280 stomach .a 2824 to 3006 197 to 14       184/197
(93 %)
4 diff
(98.0 %id)
BG913955 anaplastic oligodendroglioma with 1p/19qloss, brain .a 3106 to 3835 1 to 731       731/733
(99 %)
9 diff
(98.8 %id)
EL594960 epidermis, skin .a 3148 to 3536 406 to 9     Submitted on the opposite strand 407/427
(95 %)
56 diff
(86.9 %id)
TI_1968230801   .a 3220 to 4251 12 to 1042       1031/1264
(81 %)
10 diff
(99.3 %id)
BE926138 breast_normal .a 3450 to 3638 192 to 1       192/198
(96 %)
8 diff
(96.0 %id)
AW897424 nervous_normal .a 3459 to 3576 116 to 1       116/116
(100 %)
2 diff
(98.3 %id)
BE762821 nervous_tumor .a 3459 to 3579 129 to 10       120/129
(93 %)
0 diff
(100 %id)
BQ344120 nervous_tumor .a 3459 to 3640 181 to 1       181/181
(100 %)
2 diff
(98.9 %id)
CV396631 head_neck .a 3459 to 3821 373 to 13     Submitted on the opposite strand 361/373
(96 %)
1 diff
(99.8 %id)
CV412358 colon .a 3461 to 3819 366 to 1     Submitted on the opposite strand 366/366
(100 %)
16 diff
(95.7 %id)
CV322462 marrow .a 3477 to 3873 399 to 4     Submitted on the opposite strand 396/400
(99 %)
0 diff
(100 %id)
BP250635 hippocampus .a 3761 to 4342 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BE936358 nervous_tumor .a 3788 to 4080 294 to 2       293/305
(96 %)
0 diff
(100 %id)
BY798763 eye .a 3812 to 4427 1 to 616       616/616
(100 %)
0 diff
(100 %id)
DB061454 testis .a 3900 to 4454 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BQ307903 breast .a 3961 to 4524 573 to 9       565/591
(95 %)
11 diff
(98.2 %id)
BP251401 hippocampus .a 4014 to 4595 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DQ201780 corneal epithelium .a 4051 to 4807 1 to 758       758/758
(100 %)
3 diff
(99.7 %id)
U42061 cardiac muscle .a 4101 to 4506 1 to 406       406/406
(100 %)
0 diff
(100 %id)
CN402711 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 4111 to 4285 1 to 175       175/175
(100 %)
0 diff
(100 %id)
BM554281 brain, medulla .a 4256 to 5290 21 to 1065       1045/1065
(98 %)
37 diff
(96.6 %id)
BQ223439 melanotic melanoma, skin .a 4361 to 5257 1 to 901       901/901
(100 %)
9 diff
(99.1 %id)
TI_1968235183   .a 4540 to 5710 6 to 1162       1157/1163
(99 %)
6 diff
(99.5 %id)
CA389648 eye, RPE/choroid .a 4653 to 5380 1 to 726       726/726
(100 %)
3 diff
(99.6 %id)
AA985086 schizophrenic brain S-11 frontal lobe .a 4685 to 5012 328 to 1       328/328
(100 %)
0 diff
(100 %id)
DA230388 brain .a 4778 to 5413 2 to 638   capped   637/637
(100 %)
4 diff
(99.4 %id)
DA098412 cerebellum .a 4794 to 5336 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BF926894 nervous_tumor .a 4810 to 4996 195 to 9     Submitted on the opposite strand 187/198
(94 %)
0 diff
(100 %id)
BY795479 eye .a 4813 to 5492 1 to 679       679/679
(100 %)
1 diff
(99.9 %id)
AI022361 senescent fibroblast .a 4884 to 4964 49 to 129   AAA Submitted on the opposite strand 81/129
(62 %)
6 diff
(95.4 %id)
TI_1968230821   .a 5020 to 6144 1 to 1110       1110/1280
(86 %)
15 diff
(98.9 %id)
DB064116 testis .a 5036 to 5583 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB277609 uterus .a 5187 to 5662 2 to 477   capped   476/476
(100 %)
0 diff
(100 %id)
DB285449 uterus .a 5205 to 5755 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB069289 testis .a 5278 to 5831 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA241865 brain .a 5335 to 5912 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA868437 Prostate .a 5345 to 5827 2 to 487   capped   486/486
(100 %)
3 diff
(99.4 %id)
DA455598 tongue, tumor tissue .a 5355 to 5907 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BI043685 ovary .a 5358 to 5856 507 to 5       503/507
(99 %)
21 diff
(95.9 %id)
CV570242 cornea, eye .a 5377 to 5921 1 to 545       545/545
(100 %)
0 diff
(100 %id)
DA117096 cerebellum .a 5385 to 5921 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
BF904029 marrow .a 5405 to 5899 499 to 2     Submitted on the opposite strand 498/499
(99 %)
0 diff
(100 %id)
CV573207 cornea, eye .a 5405 to 6023 1 to 619       619/619
(100 %)
1 diff
(99.9 %id)
DA232898 brain .a 5433 to 5942 2 to 511   capped   510/510
(100 %)
0 diff
(100 %id)
DB279568 uterus .a 5433 to 5976 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB223267 trachea .a 5446 to 5950 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
DB286969 uterus .a 5452 to 6003 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB292650 uterus .a 5456 to 6051 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA223779 brain .a 5457 to 6019 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA656613   .a 5457 to 6024 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA193396 amygdala .a 5458 to 6053 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA194367 amygdala .a 5459 to 6044 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DB143552 thymus .a 5460 to 6018 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA789242 brain .a 5462 to 5942 2 to 482   capped   481/481
(100 %)
0 diff
(100 %id)
DA851151 placenta .a 5464 to 6032 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA447464 tongue, tumor tissue .a 5472 to 6027 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA459773 tongue, tumor tissue .a 5491 to 6054 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA867135 Prostate .a 5507 to 6042 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DB077612 testis .a 5550 to 6113 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA707647   .a 5557 to 6140 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
CB955644 Pooled-Glandular .a 5593 to 6131 550 to 1     Submitted on the opposite strand 550/879
(62 %)
14 diff
(98.5 %id)
DA189994 amygdala .a 5632 to 6204 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA473079   .a 5632 to 6192 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA557768   .a 5634 to 6183 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
CN425664 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 5644 to 6375 1 to 731       731/731
(100 %)
1 diff
(99.9 %id)
DA304937 hippocampus .a 5655 to 6222 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA491191 brain .a 5660 to 6230 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA851755 placenta .a 5681 to 6231 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA884603   .a 5718 to 6291 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA188572 amygdala .a 5741 to 6291 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
AL120634 amygdala .a 5759 to 6390 1 to 632       632/632
(100 %)
5 diff
(99.3 %id)
BQ889600 dorsal root ganglia .a 5799 to 6685 1 to 892       892/902
(98 %)
10 diff
(98.9 %id)
AA376080 lung .a 5802 to 6022 1 to 221       221/221
(100 %)
0 diff
(100 %id)
DA148316 amygdala .a 5897 to 6469 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
AL598410   .a 5900 to 6575 1 to 676       676/676
(100 %)
3 diff
(99.6 %id)
DB109755 thymus .a 5906 to 6472 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA276675 corpus callosum .a 5912 to 6491 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA663385   .a 5961 to 6521 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA655072   .a 6043 to 6607 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA179744 amygdala .a 6056 to 6588 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
CB216371 normal endometrium, mid-secretory phase,cycle day 23, uterus .a 6064 to 6679 1 to 616       616/616
(100 %)
0 diff
(100 %id)
AL598568   .a 6076 to 6653 1 to 578       578/578
(100 %)
0 diff
(100 %id)
AW888226 ovary .a 6082 to 8967 14 to 2900   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 2887/2900
(99 %)
6 diff
(99.8 %id)
DA948101 Spleen .a 6098 to 6642 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA301591 hippocampus .a 6127 to 6670 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA037574   .a 6152 to 6692 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
BE140745 head_neck .a 6156 to 6339 184 to 1     Submitted on the opposite strand 184/184
(100 %)
1 diff
(99.5 %id)
BU183045 melanotic melanoma, skin .a 6157 to 6976 1 to 829       829/831
(99 %)
15 diff
(98.2 %id)
CD359046 testis .a 6157 to 6938 1 to 791       791/932
(84 %)
19 diff
(98.0 %id)
BE140747 head_neck .a 6160 to 6339 179 to 1     Submitted on the opposite strand 179/179
(100 %)
3 diff
(98.4 %id)
DB248390 uterus .a 6169 to 6806 2 to 640   capped   639/639
(100 %)
2 diff
(99.7 %id)
DA175072 amygdala .a 6200 to 6761 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BE140755 head_neck .a 6202 to 6339 138 to 1     Submitted on the opposite strand 138/138
(100 %)
4 diff
(97.2 %id)
DA582301 lung .a 6239 to 6808 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DB248944 uterus .a 6244 to 6803 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
AA360925   .a 6278 to 6528 1 to 251       251/251
(100 %)
0 diff
(100 %id)
AW886437 ovary .a 6295 to 6623 330 to 1       330/330
(100 %)
1 diff
(99.7 %id)
BE073407 breast .a 6295 to 6632 345 to 8     Submitted on the opposite strand 338/345
(97 %)
0 diff
(100 %id)
DB273615 uterus .a 6377 to 6928 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA717734   .a 6406 to 6977 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
TI_1968235619   .a 6572 to 7706 1144 to 17       1128/1238
(91 %)
0 diff
(100 %id)
DA166923 amygdala .a 6645 to 7204 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA178199 amygdala .a 6649 to 7204 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA028322   .a 6653 to 7226 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA828561 placenta .a 6653 to 7327 2 to 677   capped   676/677
(99 %)
8 diff
(98.9 %id)
DB248252 uterus .a 6660 to 7244 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA271111 caudate nucleus .a 6662 to 7231 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB244840 uterus, tumor tissue .a 6662 to 7226 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
CD106704 brain, Pituitary .a 6673 to 7540 29 to 903       875/908
(96 %)
10 diff
(98.9 %id)
DB201394 trachea .a 6682 to 7259 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB272989 uterus .a 6682 to 7081 2 to 401   capped   400/400
(100 %)
0 diff
(100 %id)
AW836777 leiomios .a 6709 to 7253 553 to 9       545/553
(98 %)
0 diff
(100 %id)
DA481689   .a 6725 to 7301 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA733474   .a 6740 to 7509 2 to 774   capped   773/774
(99 %)
13 diff
(98.4 %id)
F08377 brain, total brain .a 6769 to 7028 1 to 260       260/260
(100 %)
0 diff
(100 %id)
DA532671 brain .a 6770 to 7344 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA867578 Prostate .a 6773 to 7299 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
DB256636 uterus .a 6777 to 7349 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB263198 uterus .a 6777 to 7357 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA020756   .a 6787 to 7344 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA008444 adipose .a 6793 to 7334 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA602335   .a 6794 to 7356 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA686087   .a 6797 to 7288 2 to 493   capped   492/492
(100 %)
0 diff
(100 %id)
Z43329 brain, total brain .a 6805 to 7167 1 to 363       363/363
(100 %)
0 diff
(100 %id)
DB250395 uterus .a 6821 to 7375 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
CB044092 colon, juvenile granulosa tumor .a 6826 to 7482 12 to 665     Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 654/665
(98 %)
6 diff
(99.1 %id)
DA593883 lung .a 6837 to 7399 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
AA504655   .a 6844 to 7323 1 to 480       480/480
(100 %)
0 diff
(100 %id)
EH330025   .a 6902 to 6988 5 to 92       88/95
(92 %)
4 diff
(95.8 %id)
CB136898 Liver .a 6922 to 7408 1 to 487       487/487
(100 %)
0 diff
(100 %id)
BQ227855 epithelioid carcinoma, Pancreas .a 7002 to 7722 7 to 738       732/850
(86 %)
22 diff
(97.5 %id)
Z42550 brain, total brain .a 7039 to 7286 1 to 248       248/248
(100 %)
1 diff
(99.6 %id)
DR423714 eye, Pterygium .a 7040 to 7701 1 to 662       662/662
(100 %)
0 diff
(100 %id)
DA922116 small intestine .a 7064 to 7627 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
TI_1968230825   .a 7156 to 8341 14 to 1189       1176/1311
(89 %)
18 diff
(98.7 %id)
AW365683 head_neck .a 7219 to 7783 566 to 1       566/566
(100 %)
17 diff
(97.0 %id)
AW365625 head_neck .a 7237 to 7787 565 to 16       550/578
(95 %)
0 diff
(100 %id)
AA099905 uterus .a 7246 to 7541 305 to 10     Submitted on the opposite strand 296/305
(97 %)
0 diff
(100 %id)
AA156846 uterus .a 7246 to 7541 305 to 10     Submitted on the opposite strand 296/305
(97 %)
0 diff
(100 %id)
AA099920 uterus .a 7247 to 7516 1 to 270     Submitted on the opposite strand 270/270
(100 %)
0 diff
(100 %id)
AA156674 uterus .a 7247 to 7517 1 to 271     Submitted on the opposite strand 271/271
(100 %)
0 diff
(100 %id)
AW365687 head_neck .a 7248 to 7819 610 to 41       570/610
(93 %)
0 diff
(100 %id)
AW365849 head_neck .a 7279 to 7816 538 to 1       538/538
(100 %)
6 diff
(98.9 %id)
AW178314 head_neck .a 7300 to 7810 511 to 1       511/512
(99 %)
0 diff
(100 %id)
BQ348829 head_neck .a 7346 to 7701 356 to 1       356/357
(99 %)
20 diff
(94.4 %id)
DA081420 cerebellum .a 7384 to 7958 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BU145826 dorsal root ganglia .a 7399 to 8294 1 to 902       902/906
(99 %)
26 diff
(97.2 %id)
CR614539 adult brain .a 7429 to 8931 1 to 1503       1503/1503
(100 %)
0 diff
(100 %id)
TI_1968235849   .a 7437 to 8348 998 to 93     Submitted on the opposite strand 906/1105
(81 %)
0 diff
(100 %id)
AW239322 lung, cell line .a 7457 to 7849 1 to 393       393/393
(100 %)
0 diff
(100 %id)
AW365666 head_neck .a 7474 to 7739 285 to 15       271/285
(95 %)
0 diff
(100 %id)
CU454638 epidermis .a 7482 to 7977 13 to 508       496/513
(96 %)
6 diff
(98.9 %id)
AA319368 adrenal gland .a 7500 to 7756 1 to 257       257/257
(100 %)
0 diff
(100 %id)
AW365583 head_neck .a 7528 to 7821 293 to 3       291/293
(99 %)
0 diff
(100 %id)
AW365584 head_neck .a 7528 to 7803 281 to 6       276/281
(98 %)
0 diff
(100 %id)
AW365731 head_neck .a 7532 to 7766 254 to 18       237/254
(93 %)
0 diff
(100 %id)
BF365807 nervous_tumor .a 7542 to 7968 470 to 39       432/485
(89 %)
0 diff
(100 %id)
BF326669 breast_normal .a 7562 to 8078 519 to 2       518/519
(99 %)
0 diff
(100 %id)
CN299964 embryonic stem cells, DMSO-treated H9 cellline .a 7563 to 8209 1 to 647       647/647
(100 %)
0 diff
(100 %id)
AA853604 Bone, Hip .a 7590 to 7879 10 to 300       291/301
(96 %)
5 diff
(98.4 %id)
FN099094 breast carcinoma .a 7619 to 7686 67 to 1     Submitted on the opposite strand 67/67
(100 %)
1 diff
(98.6 %id)
CN299965 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 7644 to 8358 1 to 715       715/715
(100 %)
0 diff
(100 %id)
CV571239 cornea, eye .a 7646 to 8240 1 to 595       595/595
(100 %)
0 diff
(100 %id)
DB282033 uterus .a 7648 to 8177 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
BE384169 melanotic melanoma, skin .a 7661 to 8220 1 to 560       560/560
(100 %)
0 diff
(100 %id)
TI_154107274   .a 7672 to 8590 991 to 84   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 908/971
(93 %)
20 diff
(98.0 %id)
TI_1968230803   .a 7673 to 8348 1 to 676       676/1286
(52 %)
7 diff
(99.5 %id)
BG675428 skin .a 7692 to 8531 1 to 843       843/843
(100 %)
13 diff
(98.5 %id)
BQ720295 sympathetic trunk .a 7709 to 8345 1 to 642       642/1004
(63 %)
10 diff
(99.1 %id)
BF445962 breast, invasive ductal carcinoma, 3 pooled samples .a 7710 to 8260 1 to 551     Submitted on the opposite strand 551/551
(100 %)
0 diff
(100 %id)
CN299962 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 7718 to 8384 1 to 667       667/667
(100 %)
2 diff
(99.8 %id)
CD515773 White Matter .a 7723 to 8685 1 to 968       968/968
(100 %)
11 diff
(98.9 %id)
BE925801 breast_normal .a 7738 to 8150 416 to 2       415/416
(99 %)
0 diff
(100 %id)
ES311476 frontal balding hair, skin .a 7743 to 7928 1 to 186       186/186
(100 %)
0 diff
(100 %id)
DT216623 brain .a 7744 to 8378 1 to 635       635/635
(100 %)
0 diff
(100 %id)
DA828838 placenta .a 7746 to 8407 2 to 667   capped   666/676
(98 %)
4 diff
(99.5 %id)
BG528090 lung, mucoepidermoid carcinoma .a 7748 to 8473 1 to 718       718/784
(91 %)
20 diff
(97.5 %id)
FN154737 breast carcinoma .a 7754 to 7863 112 to 1     Submitted on the opposite strand 112/112
(100 %)
2 diff
(98.3 %id)
BG674054 skin .a 7756 to 8611 1 to 850       850/1051
(80 %)
24 diff
(97.8 %id)
BF793325 adrenal cortex carcinoma, cell line, adrenal gland .a 7786 to 8550 1 to 759       759/961
(78 %)
17 diff
(98.3 %id)
CA447037 Chondrosarcoma, Left Pubic Bone .a 7796 to 8596 808 to 11       798/808
(98 %)
0 diff
(100 %id)
CR622884 thymus .a 7823 to 8950 1 to 1128       1128/1128
(100 %)
0 diff
(100 %id)
Z42673 brain, total brain .a 7837 to 8150 1 to 314       314/314
(100 %)
0 diff
(100 %id)
W26409 eye, retina .a 7841 to 8290 475 to 22       454/523
(86 %)
25 diff
(95.3 %id)
DT217092 brain .a 7869 to 8548 1 to 679       679/679
(100 %)
1 diff
(99.9 %id)
BG674111 skin .a 7881 to 8763 1 to 884       884/884
(100 %)
22 diff
(97.6 %id)
BU590066 mixed (pool of 40 RNAs) .a 7896 to 8218 323 to 1     Submitted on the opposite strand 323/438
(73 %)
1 diff
(99.8 %id)
TI_154107275   .a 7900 to 8590 763 to 79   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 685/918
(74 %)
7 diff
(99.3 %id)
W27425 eye, retina .a 7901 to 8381 517 to 30       488/565
(86 %)
0 diff
(100 %id)
CB216798 normal endometrium, mid-secretory phase,cycle day 23, uterus .a 7913 to 8537 1 to 625       625/625
(100 %)
0 diff
(100 %id)
BG167534 hypernephroma, cell line, Kidney .a 7915 to 8602 1 to 683       683/684
(99 %)
9 diff
(98.7 %id)
CA447038 Chondrosarcoma, Left Pubic Bone .a 7915 to 8596 688 to 11       678/688
(98 %)
0 diff
(100 %id)
BQ010188 Chondrosarcoma, Left Pubic Bone .a 7917 to 8596 686 to 11       676/686
(98 %)
0 diff
(100 %id)
BQ019911 Chondrosarcoma, Left Pubic Bone .a 7938 to 8596 667 to 11       657/667
(98 %)
0 diff
(100 %id)
BE875381 large cell carcinoma, undifferentiated, lung .a 7940 to 8583 1 to 637       637/709
(89 %)
6 diff
(99.2 %id)
FN123863 breast carcinoma .a 7957 to 8036 1 to 79       79/80
(98 %)
2 diff
(97.5 %id)
CN299966 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 7959 to 8757 1 to 799       799/800
(99 %)
5 diff
(99.4 %id)
BM998665 lung, Metastatic Chondrosarcoma .a 7974 to 8596 631 to 11       621/632
(98 %)
0 diff
(100 %id)
FN156607 breast carcinoma .a 8002 to 8093 1 to 89       89/100
(89 %)
3 diff
(97.0 %id)
BG167803 hypernephroma, cell line, Kidney .a 8017 to 8760 1 to 735       735/837
(87 %)
22 diff
(97.4 %id)
AA831803 breast, infiltrating ductal carcinoma .a 8022 to 8290 303 to 35       269/307
(87 %)
0 diff
(100 %id)
W28314 eye, retina .a 8030 to 8344 322 to 7       316/520
(60 %)
0 diff
(100 %id)
AW884806 ovary .a 8037 to 8362 327 to 2       326/339
(96 %)
0 diff
(100 %id)
BQ635885 eye, retina .a 8059 to 8149 1 to 91       91/91
(100 %)
0 diff
(100 %id)
BP420159 small intestine .a 8059 to 8640 1 to 582     Submitted on the opposite strand 582/582
(100 %)
0 diff
(100 %id)
BF872421 lung_tumor .a 8061 to 8480 428 to 1     Submitted on the opposite strand 428/430
(99 %)
23 diff
(94.7 %id)
AA148566 uterus .a 8078 to 8547 1 to 472       472/472
(100 %)
3 diff
(99.4 %id)
AW362240 colon .a 8091 to 8659 586 to 18       569/586
(97 %)
0 diff
(100 %id)
AW362264 colon .a 8091 to 8659 586 to 18       569/586
(97 %)
0 diff
(100 %id)
AW362346 colon .a 8091 to 8659 586 to 18       569/586
(97 %)
0 diff
(100 %id)
TI_159705844   .a 8093 to 8966 902 to 37   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 866/990
(87 %)
20 diff
(98.0 %id)
BE069588 breast .a 8096 to 8585 489 to 2     Submitted on the opposite strand 488/489
(99 %)
0 diff
(100 %id)
BE069597 breast .a 8096 to 8636 541 to 2     Submitted on the opposite strand 540/541
(99 %)
0 diff
(100 %id)
BE069606 breast .a 8096 to 8635 537 to 3     Submitted on the opposite strand 535/537
(99 %)
0 diff
(100 %id)
BE069648 breast .a 8096 to 8633 535 to 1     Submitted on the opposite strand 535/535
(100 %)
10 diff
(98.2 %id)
BE069689 breast .a 8096 to 8642 547 to 4     Submitted on the opposite strand 544/547
(99 %)
10 diff
(98.2 %id)
BE069702 breast .a 8099 to 8615 517 to 1     Submitted on the opposite strand 517/520
(99 %)
14 diff
(97.4 %id)
AI148294 uterus .a 8130 to 8587 458 to 1       458/458
(100 %)
0 diff
(100 %id)
AW517686 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 8133 to 8591 459 to 1       459/459
(100 %)
0 diff
(100 %id)
TI_154101484   .a 8136 to 8961 895 to 79   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 817/822
(99 %)
16 diff
(98.1 %id)
TI_154051381   .a 8138 to 8967 902 to 85   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 818/932
(87 %)
20 diff
(97.9 %id)
BE069742 breast .a 8153 to 8635 501 to 24     Submitted on the opposite strand 478/503
(95 %)
0 diff
(100 %id)
AW885034 ovary .a 8168 to 8354 187 to 2       186/200
(93 %)
0 diff
(100 %id)
BQ719422 sympathetic trunk .a 8174 to 8937 1 to 771       771/948
(81 %)
22 diff
(97.7 %id)
AW152229 brain, tumor, 5 pooled (see description) .a 8178 to 8592 415 to 1       415/415
(100 %)
0 diff
(100 %id)
AA960971 pooled .a 8188 to 8589 402 to 1       402/402
(100 %)
0 diff
(100 %id)
AW302563 brain, three pooled meningiomas .a 8208 to 8590 383 to 1       383/383
(100 %)
0 diff
(100 %id)
AA429786   .a 8217 to 8592 1 to 378       378/378
(100 %)
3 diff
(99.3 %id)
BF724145 eye, Iris .a 8219 to 8736 1 to 518       518/518
(100 %)
0 diff
(100 %id)
BF872424 lung_tumor .a 8231 to 8693 502 to 39     Submitted on the opposite strand 464/504
(92 %)
0 diff
(100 %id)
BM995233 Chondrosarcoma, Left Pubic Bone .a 8246 to 8925 698 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 680/680
(100 %)
1 diff
(99.9 %id)
TI_151721983   .a 8249 to 8967 799 to 92   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 708/746
(94 %)
20 diff
(97.4 %id)
CB162809 Liver .a 8256 to 8829 1 to 574       574/574
(100 %)
0 diff
(100 %id)
W67182 heart .a 8266 to 8504 1 to 239       239/239
(100 %)
0 diff
(100 %id)
W68104 heart .a 8274 to 8837 1 to 558       558/673
(82 %)
7 diff
(99.0 %id)
BM690521 eye, RPE and Choroid .a 8280 to 8910 638 to 8     Submitted on the opposite strand 631/638
(98 %)
0 diff
(100 %id)
CA441935 Chondrosarcoma, Left Pubic Bone .a 8288 to 8961 691 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 673/673
(100 %)
1 diff
(99.9 %id)
AA853605 Bone, Hip .a 8297 to 8590 300 to 7       294/300
(98 %)
0 diff
(100 %id)
BQ446645 Knee, Osteoarthritic Cartilage .a 8306 to 8967 679 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 661/661
(100 %)
1 diff
(99.9 %id)
CB044091 colon, juvenile granulosa tumor .a 8322 to 8967 663 to 18   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 646/646
(100 %)
0 diff
(100 %id)
TI_149280795   .a 8350 to 8967 704 to 87   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 618/782
(79 %)
2 diff
(99.8 %id)
TI_154157625   .a 8353 to 8937 77 to 659       583/586
(99 %)
7 diff
(98.9 %id)
BE830140 lung_tumor .a 8354 to 8584 231 to 1       231/397
(58 %)
3 diff
(99.3 %id)
T33746 brain .a 8355 to 8590 236 to 1       236/236
(100 %)
0 diff
(100 %id)
AI924233 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 8366 to 8582 217 to 1       217/217
(100 %)
0 diff
(100 %id)
DB329771 Prostate .a 8368 to 8961 595 to 1       595/597
(99 %)
2 diff
(99.7 %id)
AL049068 testis .a 8379 to 8903 41 to 570       530/570
(92 %)
8 diff
(98.6 %id)
AW997318 breast_normal .a 8384 to 8721 376 to 39     Submitted on the opposite strand 338/376
(89 %)
0 diff
(100 %id)
BU619304 Cell Line, Chondrosarcoma .a 8385 to 8967 602 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 584/584
(100 %)
3 diff
(99.5 %id)
CB963188 Blood vessels - aorta, basilar and artery .a 8388 to 8969 1 to 583       583/588
(99 %)
6 diff
(99.0 %id)
DB365390   .a 8391 to 8967 575 to 1       575/577
(99 %)
4 diff
(99.4 %id)
DB319253 lung .a 8396 to 8925 532 to 1       532/532
(100 %)
3 diff
(99.5 %id)
T31495 colon, embryo .a 8400 to 8597 1 to 198       198/198
(100 %)
0 diff
(100 %id)
FN167268 breast carcinoma .a 8403 to 8496 93 to 1     Submitted on the opposite strand 93/93
(100 %)
1 diff
(99.0 %id)
BE835231 prostate_normal .a 8406 to 8818 413 to 1       413/413
(100 %)
0 diff
(100 %id)
BE835382 prostate_normal .a 8406 to 8818 413 to 1       413/413
(100 %)
0 diff
(100 %id)
BE858286 brain, glioblastoma (pooled) .a 8422 to 8966 546 to 1       546/546
(100 %)
3 diff
(99.5 %id)
AI749953 colon .a 8427 to 8967 541 to 1       541/541
(100 %)
2 diff
(99.7 %id)
CA414462 Chondrosarcoma Grade II, Left Pelvis .a 8427 to 8967 559 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 541/541
(100 %)
0 diff
(100 %id)
CA389647 eye, RPE/choroid .a 8430 to 8908 479 to 1       479/479
(100 %)
0 diff
(100 %id)
GD158043   .a 8430 to 8596 1 to 167       167/169
(98 %)
3 diff
(98.3 %id)
BE717692 head_neck .a 8431 to 8801 1 to 370       370/640
(57 %)
4 diff
(99.4 %id)
GD147886   .a 8431 to 8596 1 to 166       166/175
(94 %)
6 diff
(96.6 %id)
DB373446 placenta .a 8431 to 8967 537 to 1       537/537
(100 %)
4 diff
(99.3 %id)
FN054888 breast carcinoma .a 8432 to 8525 1 to 94       94/94
(100 %)
0 diff
(100 %id)
GD141367   .a 8432 to 8602 1 to 171       171/171
(100 %)
7 diff
(96.0 %id)
GD136259   .a 8434 to 8602 7 to 175       169/177
(95 %)
2 diff
(98.9 %id)
BM995244 Chondrosarcoma, Left Pubic Bone .a 8436 to 8925 507 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 489/489
(100 %)
7 diff
(98.6 %id)
AI985678 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 8437 to 8582 146 to 1       146/146
(100 %)
0 diff
(100 %id)
BM422928 testis .a 8452 to 8961 570 to 60   AAA Submitted on the opposite strand 511/515
(99 %)
0 diff
(100 %id)
DB373113 placenta .a 8465 to 8967 503 to 1       503/503
(100 %)
4 diff
(99.3 %id)
AA699472 liver and spleen .a 8467 to 8968 502 to 1       502/502
(100 %)
0 diff
(100 %id)
AA865620 2 pooled tumors (clear cell type), Kidney .a 8469 to 8953 485 to 1       485/485
(100 %)
0 diff
(100 %id)
N25698.
matches multiple genes
melanocyte .a 8488 to 8967 484 to 1     also hits gene WEE1 484/486
(99 %)
10 diff
(98.0 %id)
AW468792 pooled .a 8492 to 8969 478 to 1       478/478
(100 %)
0 diff
(100 %id)
BE551738 pooled germ cell tumors .a 8502 to 8967 467 to 2       466/467
(99 %)
0 diff
(100 %id)
BP420116 small intestine .a 8503 to 8969 18 to 484     Submitted on the opposite strand 467/486
(96 %)
1 diff
(99.8 %id)
AI359848 brain, glioblastoma (pooled) .a 8503 to 8968 466 to 1       466/466
(100 %)
0 diff
(100 %id)
BE183333 head_neck .a 8521 to 8879 35 to 396       362/396
(91 %)
6 diff
(98.5 %id)
N23330 melanocyte .a 8535 to 8968 435 to 1       435/436
(99 %)
3 diff
(99.4 %id)
H27987 breast .a 8536 to 8967 433 to 1       433/433
(100 %)
2 diff
(99.6 %id)
FN162578 breast carcinoma .a 8541 to 8632 90 to 1     Submitted on the opposite strand 90/90
(100 %)
3 diff
(96.7 %id)
AA490010   .a 8542 to 8953 412 to 1       412/412
(100 %)
1 diff
(99.8 %id)
AI753331 bone marrow stroma .a 8549 to 8961 431 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 413/413
(100 %)
2 diff
(99.6 %id)
AA971558 pooled .a 8549 to 8969 424 to 4       421/424
(99 %)
0 diff
(100 %id)
BG027237 Bone, osteosarcoma, cell line .a 8551 to 8967 1 to 418   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 418/418
(100 %)
1 diff
(99.8 %id)
AA150172 uterus .a 8554 to 8961 409 to 1       409/410
(99 %)
6 diff
(98.6 %id)
CA436086 lung, Metastatic Chondrosarcoma .a 8560 to 8967 426 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 408/408
(100 %)
0 diff
(100 %id)
AA525235 ovary .a 8566 to 8946 381 to 1       381/386
(98 %)
8 diff
(98.0 %id)
BM970756 lung .a 8577 to 8967 409 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 391/391
(100 %)
8 diff
(98.0 %id)
CA943951 Pancreas, Purified pancreatic islet .a 8578 to 8967 404 to 15   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 390/390
(100 %)
3 diff
(99.3 %id)
BJ992682 hepatoblastoma .a 8579 to 8931 353 to 1       353/353
(100 %)
0 diff
(100 %id)
AW299962 Kidney .a 8584 to 8967 384 to 1       384/384
(100 %)
0 diff
(100 %id)
DV461810 cochlea, ear .a 8589 to 8760 1 to 172       172/172
(100 %)
1 diff
(99.5 %id)
AW628769 pooled .a 8591 to 8967 398 to 22   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 377/377
(100 %)
0 diff
(100 %id)
DV462120 cochlea, ear .a 8591 to 8760 3 to 172       170/172
(98 %)
6 diff
(96.6 %id)
AI678822 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 8598 to 8967 370 to 1       370/370
(100 %)
0 diff
(100 %id)
AI678977 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 8598 to 8967 382 to 13   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 370/370
(100 %)
0 diff
(100 %id)
AI860064 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 8598 to 8923 327 to 2       326/327
(99 %)
0 diff
(100 %id)
AI805470 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 8598 to 8969 372 to 1       372/372
(100 %)
0 diff
(100 %id)
AI887255 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 8598 to 8969 373 to 2       372/373
(99 %)
0 diff
(100 %id)
AI888545 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 8598 to 8966 369 to 1       369/369
(100 %)
0 diff
(100 %id)
AW103015 ovary, tumor, 5 pooled (see description) .a 8598 to 8967 370 to 1       370/370
(100 %)
0 diff
(100 %id)
AW167167 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 8598 to 8967 370 to 1       370/370
(100 %)
0 diff
(100 %id)
AW192926 adenocarcinoma, Pancreas .a 8598 to 8967 370 to 1       370/370
(100 %)
0 diff
(100 %id)
AW263848 lung, two pooled squamous cell carcinomas .a 8598 to 8969 372 to 1       372/372
(100 %)
2 diff
(99.5 %id)
AW264610 brain, three pooled meningiomas .a 8598 to 8967 370 to 1       370/370
(100 %)
0 diff
(100 %id)
AW439281 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 8598 to 8967 370 to 1       370/370
(100 %)
0 diff
(100 %id)
AW305209 brain, three pooled meningiomas .a 8598 to 8967 370 to 1       370/370
(100 %)
0 diff
(100 %id)
BE042842 colon, moderately-differentiated adenocarcinoma .a 8598 to 8969 377 to 6       372/377
(98 %)
0 diff
(100 %id)
BE047312 ovary, serous papillary tumor .a 8598 to 8967 381 to 12   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 370/370
(100 %)
0 diff
(100 %id)
BE880419 large cell carcinoma, undifferentiated, lung .a 8601 to 8967 1 to 367   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 367/367
(100 %)
1 diff
(99.8 %id)
FN104596 breast carcinoma .a 8603 to 8696 92 to 1     Submitted on the opposite strand 92/93
(98 %)
2 diff
(97.9 %id)
AI376581 pooled .a 8603 to 8962 363 to 4       360/363
(99 %)
0 diff
(100 %id)
N46009 multiple sclerosis lesions .a 8610 to 8772 1 to 164       164/164
(100 %)
4 diff
(97.6 %id)
AW103881 ovary, tumor, 5 pooled (see description) .a 8611 to 8967 357 to 1       357/357
(100 %)
0 diff
(100 %id)
BQ377556 uterus .a 8615 to 8726 1 to 108       108/110
(98 %)
6 diff
(94.6 %id)
AI017179 pooled .a 8619 to 8962 347 to 4       344/347
(99 %)
0 diff
(100 %id)
AA525298 ovary .a 8623 to 8963 344 to 4       341/344
(99 %)
0 diff
(100 %id)
Z38838 brain, total brain .a 8627 to 8918 292 to 1       292/292
(100 %)
0 diff
(100 %id)
AI073635 senescent fibroblast .a 8629 to 8962 348 to 16       333/348
(95 %)
0 diff
(100 %id)
BI497315 cochlea, ear .a 8646 to 8967 1 to 322   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 322/322
(100 %)
7 diff
(97.9 %id)
AW510480 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 8647 to 8969 325 to 3       323/325
(99 %)
0 diff
(100 %id)
AI873827 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 8677 to 8967 292 to 1       292/292
(100 %)
1 diff
(99.7 %id)
AI358469 adenocarcinoma, Pancreas .a 8679 to 8962 285 to 2       284/285
(99 %)
0 diff
(100 %id)
AA428144   .a 8699 to 8969 275 to 4       272/275
(98 %)
0 diff
(100 %id)
Z38736 brain, total brain .a 8705 to 8967 263 to 1       263/263
(100 %)
0 diff
(100 %id)
AW820749 stomach .a 8717 to 8927 1 to 211       211/211
(100 %)
0 diff
(100 %id)
AI565911 adenocarcinoma, Pancreas .a 8718 to 8967 262 to 13   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 250/250
(100 %)
0 diff
(100 %id)
AI159752 uterus .a 8719 to 8961 261 to 19   AAA   243/249
(97 %)
0 diff
(100 %id)
AI874122 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 8727 to 8968 242 to 1       242/242
(100 %)
0 diff
(100 %id)
R85959.
matches multiple genes
eye, retina .a 8740 to 8947 209 to 1     also hits gene makeru 209/209
(100 %)
2 diff
(99.1 %id)
AI369499   .a 8751 to 8969 222 to 4       219/222
(98 %)
0 diff
(100 %id)
AI399701 Prostate .a 8763 to 8961 219 to 21   AAA   199/205
(97 %)
0 diff
(100 %id)
BE041445 pooled .a 8766 to 8967 215 to 14   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 202/202
(100 %)
0 diff
(100 %id)
AW050436 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 8771 to 8967 197 to 1       197/197
(100 %)
0 diff
(100 %id)
N54082 liver and spleen .a 8784 to 8967 186 to 1       186/186
(100 %)
2 diff
(99.0 %id)
AA350133 brain .a 8789 to 8961 173 to 1       173/173
(100 %)
0 diff
(100 %id)
AI873884 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 8792 to 8968 177 to 1       177/177
(100 %)
0 diff
(100 %id)
AW151993 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 8817 to 8965 150 to 2       149/150
(99 %)
0 diff
(100 %id)
BE855954 Prostate .a 8841 to 8969 129 to 1       129/129
(100 %)
0 diff
(100 %id)
AW083737 esophagus, squamous cell carcinoma .a 8845 to 8967 123 to 1       123/123
(100 %)
1 diff
(99.2 %id)
AA283423   .a 8855 to 8961 105 to 1       105/109
(96 %)
3 diff
(97.3 %id)
EC487184 Prostate .a 8857 to 8965 111 to 4       108/111
(97 %)
0 diff
(100 %id)
BF054686 brain, oligodendroglioma .a 8866 to 8967 1 to 102       102/119
(85 %)
1 diff
(99.2 %id)
NM_001001396.1   .b 1 to 8911 1 to 8911 exact RefSeq,   8911/8911
(100 %)
7 diff
(100.0 %id)
BC140774 Brain, cerebellum, PCR rescued clones .b 316 to 8285 1 to 7969 exact tiling clone,   7969/7969
(100 %)
12 diff
(99.9 %id)
M83363 brain .b 488 to 5144 1 to 4657 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 4657/4657
(100 %)
7 diff
(99.9 %id)
DB282261 uterus .b 3670 to 4212 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA194854 amygdala .b 3708 to 4251 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
TI_1968230823   .b 3736 to 4992 1 to 1244       1244/1311
(94 %)
25 diff
(98.1 %id)
AK307104 amygdala .b 3843 to 5515 1 to 1672   tiling clone,   1672/1672
(100 %)
4 diff
(99.8 %id)
DC318103 amygdala .b 3843 to 4399 1 to 558       558/558
(100 %)
2 diff
(99.7 %id)
U42026 cardiac muscle .b 3861 to 4444 1 to 584       584/584
(100 %)
0 diff
(100 %id)
BP250752 hippocampus .b 4125 to 4706 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
AW753351 colon .b 4136 to 4661 537 to 14       524/537
(97 %)
0 diff
(100 %id)
AW895222 nervous_normal .b 4164 to 4402 7 to 245       239/245
(97 %)
2 diff
(99.2 %id)
DA322769 hippocampus .b 4296 to 4840 2 to 546   tiling clone, capped   545/545
(100 %)
0 diff
(100 %id)
DB051856 testis .b 7267 to 7835 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
BG913821 anaplastic oligodendroglioma with 1p/19qloss, brain .b 7285 to 8048 1 to 765       765/766
(99 %)
6 diff
(99.3 %id)
DB338615 testis .b 8378 to 8910 533 to 1   tiling clone,   533/533
(100 %)
2 diff
(99.7 %id)
DB232052 trachea .c 1 to 593 2 to 594   tiling clone, capped   593/593
(100 %)
6 diff
(99.0 %id)
DA759404   .c 5 to 466 2 to 463   tiling clone, capped   462/462
(100 %)
5 diff
(99.0 %id)
BC150293 Clones donated by RIKEN .c 445 to 4412 1 to 3968 S574P tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 3968/3968
(100 %)
6 diff
(99.9 %id)
AK292458 testis .c 463 to 4261 1 to 3799 N511S K766N I804L tiling clone,   3799/3799
(100 %)
11 diff
(99.8 %id)
AI636762 pooled germ cell tumors .c 3805 to 4417 611 to 1       611/611
(100 %)
10 diff
(98.4 %id)
DB526473 testis .c 3960 to 4412 1 to 453     Submitted on the opposite strand 453/453
(100 %)
0 diff
(100 %id)
DB518205 testis .c 3983 to 4412 1 to 430     Submitted on the opposite strand 430/430
(100 %)
0 diff
(100 %id)
DB509067 testis .c 4165 to 4409 23 to 263     Submitted on the opposite strand 241/266
(90 %)
11 diff
(95.9 %id)
BE742459 adenocarcinoma cell line, ovary .c 4360 to 5099 1 to 737   tiling clone,   737/783
(94 %)
19 diff
(97.6 %id)
CB177448 Pancreas, Purified pancreatic islet .c 4591 to 4927 1 to 337       337/337
(100 %)
4 diff
(98.9 %id)
BE677173 dorsal root ganglia .c 4654 to 5089 436 to 1   tiling clone,   436/436
(100 %)
1 diff
(99.8 %id)
CB177822 Pancreas, Purified pancreatic islet .c 4973 to 5087 115 to 1       115/115
(100 %)
0 diff
(100 %id)
CU448490 epidermis .d 1 to 752 753 to 2 L14A P15A L16S A17G V18C ... tiling clone, Submitted on the opposite strand 752/753
(99 %)
2 diff
(99.8 %id)
AV726332 hypothalamus .d 729 to 1394 35 to 699   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 665/699
(95 %)
6 diff
(99.2 %id)
AW089146 brain, tumor, 5 pooled (see description) .d 913 to 1089 177 to 1   tiling clone,   177/177
(100 %)
1 diff
(99.5 %id)
U42378 cardiac muscle .e 1 to 514 1 to 514 exact tiling clone,   514/514
(100 %)
0 diff
(100 %id)
U42062 cardiac muscle .f 1 to 476 1 to 476 exact tiling clone,   476/476
(100 %)
0 diff
(100 %id)
AA425548   .g-u 1 to 433 3 to 434   tiling clone, fully sequenced,   434/434
(100 %)
3 diff
(99.4 %id)
AA425388   .g-u 403 to 867 465 to 1   tiling clone, fully sequenced,   465/465
(100 %)
0 diff
(100 %id)
AI066485 senescent fibroblast .h 1 to 429 436 to 8 exact tiling clone,   429/437
(98 %)
1 diff
(99.8 %id)
CN275010 embryonic stem cells, DMSO-treated H9 cellline .i-u 1 to 789 1 to 793   tiling clone,   793/793
(100 %)
4 diff
(99.5 %id)
BE748898 bone marrow, from acute myelogenous leukemia .i-u 547 to 1279 734 to 1 K2A E3S V4G P5S Y6L ... tiling clone,   734/1015
(72 %)
20 diff
(98.1 %id)
BX537745 human endometrium .i-u 1169 to 6506 1 to 5335   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 5335/5335
(100 %)
5 diff
(100.0 %id)
AA016107 eye, retina .i-u 1386 to 1792 1 to 413       413/448
(92 %)
9 diff
(98.0 %id)
AA056998 eye, retina .i-u 1403 to 1622 1 to 223       223/223
(100 %)
4 diff
(98.3 %id)
BF366854 nervous_tumor .i-u 1407 to 1781 1 to 374       374/374
(100 %)
6 diff
(98.4 %id)
Z17823   .i-u 1770 to 2048 279 to 1       279/279
(100 %)
0 diff
(100 %id)
DA847053 placenta .j 1 to 428 2 to 432 A3P H13X S16X P87X W88M ... tiling clone, capped   431/431
(100 %)
4 diff
(99.1 %id)
AW277002 ovary, papillary serous ovarian metastasis .k 1 to 287 1 to 287 exact tiling clone, Submitted on the opposite strand 287/287
(100 %)
1 diff
(99.7 %id)
AW277057 ovary, papillary serous ovarian metastasis .k 3 to 390 33 to 420   tiling clone, Submitted on the opposite strand 388/420
(92 %)
8 diff
(98.1 %id)
AW662274 2 pooled high-grade transitional celltumors, genitourinary tract .l-u 1 to 438 438 to 1   tiling clone,   438/438
(100 %)
0 diff
(100 %id)
AI039324   .l-u 65 to 438 374 to 1       374/374
(100 %)
1 diff
(99.8 %id)
AA338194   .l-u 440 to 610 1 to 171   tiling clone,   171/171
(100 %)
0 diff
(100 %id)
AW978889   .l-u 597 to 1248 652 to 1 G16E P34L L47F   Submitted on the opposite strand 652/653
(99 %)
10 diff
(98.5 %id)
BC062445 Blood vessels- blood vessel, aorta, basilarartery. .l-u 606 to 1758 1 to 1153 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 1153/1153
(100 %)
2 diff
(99.9 %id)
CB962585 Blood vessels - aorta, basilar and artery .l-u 607 to 1274 1 to 672 exact available from MGC,   672/755
(89 %)
5 diff
(99.4 %id)
BF896724 marrow .l-u 689 to 1175 19 to 503       485/503
(96 %)
6 diff
(98.9 %id)
BF896739 marrow .l-u 689 to 1171 15 to 495       481/495
(97 %)
6 diff
(98.8 %id)
BF923875 nervous_tumor .l-u 689 to 854 25 to 189       165/189
(87 %)
3 diff
(98.5 %id)
BF925092 nervous_tumor .l-u 689 to 1162 14 to 487       474/487
(97 %)
6 diff
(98.8 %id)
BQ346969 nervous_tumor .l-u 689 to 870 22 to 201       180/201
(89 %)
6 diff
(97.1 %id)
BQ346970 nervous_tumor .l-u 689 to 853 1 to 167       167/167
(100 %)
7 diff
(95.9 %id)
BF923861 nervous_tumor .l-u 722 to 860 1 to 139       139/139
(100 %)
0 diff
(100 %id)
BF923877 nervous_tumor .l-u 722 to 870 1 to 150       150/150
(100 %)
3 diff
(98.0 %id)
AA829821 germinal center B cell .l-u 751 to 1253 507 to 5       503/507
(99 %)
0 diff
(100 %id)
BU172356 melanotic melanoma, skin .l-u 963 to 1772 1 to 815   tiling clone,   815/852
(95 %)
17 diff
(98.1 %id)
AL601702   .m-u 1 to 693 1 to 693 A16V tiling clone,   693/693
(100 %)
9 diff
(98.8 %id)
BP282363 bone marrow .n 1 to 575 8 to 583 exact tiling clone,   576/583
(98 %)
11 diff
(98.2 %id)
DB223240 trachea .o 1 to 571 2 to 572 Y29H tiling clone, capped   571/571
(100 %)
4 diff
(99.3 %id)
BF828639 head_normal .p-u 1 to 441 1 to 441 exact tiling clone,   441/493
(89 %)
5 diff
(99.0 %id)
T29705 synovial membrane .q-u 1 to 314 1 to 314 exact tiling clone,   314/314
(100 %)
1 diff
(99.7 %id)
BX647701 human prostate Gene ATP2B4, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
BY797507 eye Gene ATP2B4, variant not shown              
DB355267 whole embryo, mainly head Gene ATP2B4, variant not shown              
DA568720 whole embryo, mainly head Gene ATP2B4, variant not shown       capped      
AK026443 ileal mucosa Gene ATP2B4, variant not shown       available from FLJ, AAA This clone was ignored    
DB274179 uterus Gene ATP2B4, variant not shown       capped      
DA111322 cerebellum Gene ATP2B4, variant not shown       capped      
DB311330 thalamus Gene ATP2B4, variant not shown              
DA379484 thalamus Gene ATP2B4, variant not shown       capped      
AI887443 serous papillary carcinoma, high grade, 2pooled tumors, uterus Gene ATP2B4, variant not shown              
BE562653 endometrium, adenocarcinoma cell line, uterus Gene ATP2B4, variant not shown              
CA867793 Pancreas, Purified pancreatic islet Gene ATP2B4, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i-u, .j, .k, .l-u, .m-u, .n, .o, .p-u, .q-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI