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Report for CCDS1102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1102.1 Public Homo sapiens 1 GBA 20 108 85 CCDS HistoryNCBI Gene:2629Re-query CCDS DB by CCDS ID:1102.1Re-query CCDS DB by GeneID:2629See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 1102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000327247 ENSP00000314508 Accepted alive Link to Ensembl Transcript Viewer:ENST00000327247Link to Ensembl Protein Viewer:ENSP00000314508Re-query CCDS DB by Nucleotide ID:ENST00000327247Re-query CCDS DB by Protein ID:ENSP00000314508
Original member Current member EBI,WTSI ENST00000368373 ENSP00000357357 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368373Link to Ensembl Protein Viewer:ENSP00000357357Re-query CCDS DB by Nucleotide ID:ENST00000368373Re-query CCDS DB by Protein ID:ENSP00000357357
Original member Current member EBI,WTSI OTTHUMT00000087203 OTTHUMP00000033992 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000087203Link to Vega Protein Viewer:OTTHUMP00000033992Re-query CCDS DB by Nucleotide ID:OTTHUMT00000087203Re-query CCDS DB by Protein ID:OTTHUMP00000033992
Original member Current member EBI,WTSI OTTHUMT00000087204 OTTHUMP00000033993 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000087204Link to Vega Protein Viewer:OTTHUMP00000033993Re-query CCDS DB by Nucleotide ID:OTTHUMT00000087204Re-query CCDS DB by Protein ID:OTTHUMP00000033993
Original member Current member NCBI NM_000157.3 NP_000148.2 Accepted alive Link to Nucleotide Sequence:NM_000157.3Link to Protein Sequence:NP_000148.2Re-query CCDS DB by Nucleotide ID:NM_000157Re-query CCDS DB by Protein ID:NP_000148Link to BLink:NP_000148.2
Original member Current member NCBI NM_001005741.2 NP_001005741.1 Accepted alive Link to Nucleotide Sequence:NM_001005741.2Link to Protein Sequence:NP_001005741.1Re-query CCDS DB by Nucleotide ID:NM_001005741Re-query CCDS DB by Protein ID:NP_001005741Link to BLink:NP_001005741.1
Original member Current member NCBI NM_001005742.2 NP_001005742.1 Accepted alive Link to Nucleotide Sequence:NM_001005742.2Link to Protein Sequence:NP_001005742.1Re-query CCDS DB by Nucleotide ID:NM_001005742Re-query CCDS DB by Protein ID:NP_001005742Link to BLink:NP_001005742.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000148.2 536 P04062-1 536 100% 0 0
NP_001005741.1 536 P04062-1 536 100% 0 0
NP_001005742.1 536 P04062-1 536 100% 0 0

Chromosomal Locations for CCDS 1102.1

Assembly GRCh38.p7 (GCF_000001405.33)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 1Link to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155234995 155235100 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 155235195 155235311 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 155235681 155235844 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 155236245 155236469 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 155237341 155237578 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 155238134 155238306 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 155238517 155238650 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 155239616 155239762 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 155239886 155240077 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 155240630 155240717 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 155241086 155241112 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGAGTTTTCAAGTCCTTCCAGAGAGGAATGTCCCAAGCCTTTGAGTAGGGTAAGCATCATGGCTGGCA
GC
CTCACAGGATTGCTTCTACTTCAGGCAGTGTCGTGGGCATCAGGTGCCCGCCCCTGCATCCCTAAAAG
C
TTCGGCTACAGCTCGGTGGTGTGTGTCTGCAATGCCACATACTGTGACTCCTTTGACCCCCCGACCTTT
CCT
GCCCTTGGTACCTTCAGCCGCTATGAGAGTACACGCAGTGGGCGACGGATGGAGCTGAGTATGGGGC
CC
ATCCAGGCTAATCACACGGGCACAGGCCTGCTACTGACCCTGCAGCCAGAACAGAAGTTCCAGAAAGT
G
AAGGGATTTGGAGGGGCCATGACAGATGCTGCTGCTCTCAACATCCTTGCCCTGTCACCCCCTGCCCAA
AAT
TTGCTACTTAAATCGTACTTCTCTGAAGAAGGAATCGGATATAACATCATCCGGGTACCCATGGCCA
GC
TGTGACTTCTCCATCCGCACCTACACCTATGCAGACACCCCTGATGATTTCCAGTTGCACAACTTCAG
C
CTCCCAGAGGAAGATACCAAGCTCAAGATACCCCTGATTCACCGAGCCCTGCAGTTGGCCCAGCGTCCC
GTT
TCACTCCTTGCCAGCCCCTGGACATCACCCACTTGGCTCAAGACCAATGGAGCGGTGAATGGGAAGG
GG
TCACTCAAGGGACAGCCCGGAGACATCTACCACCAGACCTGGGCCAGATACTTTGTGAAGTTCCTGGA
T
GCCTATGCTGAGCACAAGTTACAGTTCTGGGCAGTGACAGCTGAAAATGAGCCTTCTGCTGGGCTGTTG
AGT
GGATACCCCTTCCAGTGCCTGGGCTTCACCCCTGAACATCAGCGAGACTTCATTGCCCGTGACCTAG
GT
CCTACCCTCGCCAACAGTACTCACCACAATGTCCGCCTACTCATGCTGGATGACCAACGCTTGCTGCT
G
CCCCACTGGGCAAAGGTGGTACTGACAGACCCAGAAGCAGCTAAATATGTTCATGGCATTGCTGTACAT
TGG
TACCTGGACTTTCTGGCTCCAGCCAAAGCCACCCTAGGGGAGACACACCGCCTGTTCCCCAACACCA
TG
CTCTTTGCCTCAGAGGCCTGTGTGGGCTCCAAGTTCTGGGAGCAGAGTGTGCGGCTAGGCTCCTGGGA
T
CGAGGGATGCAGTACAGCCACAGCATCATCACGAACCTCCTGTACCATGTGGTCGGCTGGACCGACTGG
AAC
CTTGCCCTGAACCCCGAAGGAGGACCCAATTGGGTGCGTAACTTTGTCGACAGTCCCATCATTGTAG
AC
ATCACCAAGGACACGTTTTACAAACAGCCCATGTTCTACCACCTTGGCCACTTCAGCAAGTTCATTCC
T
GAGGGCTCCCAGAGAGTGGGGCTGGTTGCCAGTCAGAAGAACGACCTGGACGCAGTGGCACTGATGCAT
CCC
GATGGCTCTGCTGTTGTGGTCGTGCTAAACCGCTCCTCTAAGGATGTGCCTCTTACCATCAAGGATC
CT
GCTGTGGGCTTCCTGGAGACAATCTCACCTGGCTACTCCATTCACACCTACCTGTGGCGTCGCCAGTG
A


Translation (536 aa):
MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTF
P
ALGTFSRYESTRSGRRMELSMGPIQANHTGT
GLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQ
N
LLLKSYFSEE
GIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRP
V
SLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFV
KFLDAYAEHKLQFWAVTAENEPSAGLL
S
GYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKV
VLTDPEAAKYVHGIAVH
W
YLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIIT
NLLYHVVGWTDW
N
LALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHF
SKFIPEGSQRVGLVASQKNDLDAVALMH
P
DGSAVVVVLN
RSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ



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 Links to:   History report
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