NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57549.1 Public Mus musculus 7 Bcat2 23 108 98 CCDS HistoryNCBI Gene:12036Re-query CCDS DB by CCDS ID:57549.1Re-query CCDS DB by GeneID:12036See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000211173.1 ENSMUSP00000147628.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211173.1Link to Ensembl Protein Viewer:ENSMUSP00000147628.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211173Re-query CCDS DB by Protein ID:ENSMUSP00000147628
Original member Current member EBI ENSMUST00000209204.1 ENSMUSP00000148152.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209204.1Link to Ensembl Protein Viewer:ENSMUSP00000148152.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209204Re-query CCDS DB by Protein ID:ENSMUSP00000148152
Original member NCBI NM_001243052.1 NP_001229981.1 Updated not alive Link to Nucleotide Sequence:NM_001243052.1Link to Protein Sequence:NP_001229981.1Re-query CCDS DB by Nucleotide ID:NM_001243052Re-query CCDS DB by Protein ID:NP_001229981
Current member NCBI NM_001243052.2 NP_001229981.1 Accepted alive Link to Nucleotide Sequence:NM_001243052.2Link to Protein Sequence:NP_001229981.1Re-query CCDS DB by Nucleotide ID:NM_001243052Re-query CCDS DB by Protein ID:NP_001229981Link to BLAST:NP_001229981.1

Chromosomal Locations for CCDS 57549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45575820 45576002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45584917 45585027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45585111 45585230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45585414 45585577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45587649 45587791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45587935 45588020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45588239 45588379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45588454 45588528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45589306 45589344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGACCAAAGAACCACAGAAGAAGCCAGCCCCTAGCCAGGCACTGCTGTTTGGGAAGACCTTCACAGACC
ACATGCTGATGGTGGAGTGGAATAACAAGGCTGGATGGGGCCCACCAAGGATCCAGCCCTTCCAGAACCT
CACGCTACACCCAGCCTGCTCTGGTCTGCACTACTCTCTGCAGCTCTTTGAGGGCTTGAAAGCATACAAA
GGTGGAGACCAGCAGGTACGCCTCTTCCGGCCCTGGCTCAACATGGACAGGATGCTACGTTCTGCTAGGC
GCCTCTGCCTGCCAGACTTTGACAAGCAGGAGCTGTTGGAGTGTATCCGCCAGCTCATTGAAGTAGACAA
AGACTGGGTTCCCGATGGCAACGGAACGAGCCTCTACGTGCGGCCCGTGCTGATCGGGAATGAGCCCTCG
CTGGGTGTTGGTATGGTCACACAAGCCCTCCTGTACGTCATTCTGTGCCCTGTGGGCTCCTACTTCCCTG
GAGACTCCATGACACCTGTCTCCCTCCTGGCGGACCCTTCATTCGTCAGAGCCTGGATAGGCGGAGTCGG
TGACTGCAAGTTGGGGGGGAACTATGGACCCACTGTGGCTGTGCAGCGAGAAGCCCAGAAGAGAGGCTGC
GAGCAGGTCCTCTGGCTGTACGGGCCAGACCACCAGCTCACTGAGGTGGGCACCATGAACATCTTTGTCT
ACTGGACCCATGAAGACGGAGTACTGGAGCTGGTAACCCCCCCACTGAATGGCGTCATCTTGCCTGGAGT
AGTTCGACAAAGTCTGCTGGATCTGGCCAGGACTTGGGGTGAGTTCCGGGTGGCAGAACGCAAGGTCACT
ATGAAGGAATTGAAGCGGGCGCTGGAGGAAGGCCGAGTGCGAGAAGTCTTCGGCTCAGGCACTGCTTGTC
AGGTCTGCCCGGTGCACCAAATCCTGTATGAAGGCAAGCAACTCCACATACCTACCATGGAGAACGGCCC
AGAGCTCATCCTGCGCTTCCAGAAGGAACTGAAGGCTATTCAGTACGGAGCCAGTGCCCACGATTGGATG
TTTCGGGTGTGA

Translation (353 aa):
MTKEPQKKPAPSQALLFGKTFTDHMLMVEWNNKAGWGPPRIQPFQNLTLHPACSGLHYSLQLFEGLKAYK
GGDQQVRLFRPWLNMDRMLRSARRLCLPDFDKQELLECIRQLIEVDKDWVPDGNGTSLYVRPVLIGNEPS
LGVGMVTQALLYVILCPVGSYFPGDSMTPVSLLADPSFVRAWIGGVGDCKLGGNYGPTVAVQREAQKRGC
EQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDLARTWGEFRVAERKVT
MKELKRALEEGRVREVFGSGTACQVCPVHQILYEGKQLHIPTMENGPELILRFQKELKAIQYGASAHDWM
FRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH