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Report for CCDS25267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25267.1 Public Mus musculus 11 H1f9 23 108 98 CCDS HistoryNCBI Gene:54388Re-query CCDS DB by CCDS ID:25267.1Re-query CCDS DB by GeneID:54388See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25267.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038928.6 ENSMUSP00000039866.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038928.6Link to Ensembl Protein Viewer:ENSMUSP00000039866.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038928Re-query CCDS DB by Protein ID:ENSMUSP00000039866
Original member Current member NCBI NM_018792.2 NP_061262.1 Accepted alive Link to Nucleotide Sequence:NM_018792.2Link to Protein Sequence:NP_061262.1Re-query CCDS DB by Nucleotide ID:NM_018792Re-query CCDS DB by Protein ID:NP_061262Link to BLAST:NP_061262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061262.1 170 Q9QYL0 170 100% 0 0

Chromosomal Locations for CCDS 25267.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94967881 94968393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGGCTCAAATGGTGGCTGGAGACCAAGATGCCGGCACACTGTGGGTCCCAAGCCAGAGTGAGAGTCAAA
CTGAGTCCGACATCAGTACCCAAAGCCTGCGGAAGCCCACCATGTCGTATGTGATTCTGAAGACTTTGGC
TGACAAGCGGGTACATAATTGTGTGTCCCTTGCTACCTTGAAGAAAGCTGTGTCTATCACAGGGTACAAT
ATGACCCATAACACCTGGCGCTTCAAGCGTGTGCTCCAGAATCTACTCGATAAAGGCATGATCATGCATG
TGACCTGCTGCAAGGGTGCCTCCGGCTCCCTCTGCCTGTGCAAGGAGCGGGCCCTCAAGTCCAACCACAG
GGCCAAGAGATGCCAGGACAGACAGAAGAGCCAGAAGCCTCAGAAGCCTGGGCAGCGTGAGTCTGAACCA
TGCCAATTGCTACTAAGCTCCAAAAAGAAGAATGACCAGCTTTTCAAAGGAGTCCGTAGGGTGGCCAAAG
GCAACCGCCATTGCCATTATTAA

Translation (170 aa):
MAQMVAGDQDAGTLWVPSQSESQTESDISTQSLRKPTMSYVILKTLADKRVHNCVSLATLKKAVSITGYN
MTHNTWRFKRVLQNLLDKGMIMHVTCCKGASGSLCLCKERALKSNHRAKRCQDRQKSQKPQKPGQRESEP
CQLLLSSKKKNDQLFKGVRRVAKGNRHCHY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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