NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25294.1 Public Mus musculus 11 Hoxb7 23 108 98 CCDS HistoryNCBI Gene:15415Re-query CCDS DB by CCDS ID:25294.1Re-query CCDS DB by GeneID:15415See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049352.7 ENSMUSP00000040121.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049352.7Link to Ensembl Protein Viewer:ENSMUSP00000040121.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049352Re-query CCDS DB by Protein ID:ENSMUSP00000040121
Original member Current member NCBI NM_010460.2 NP_034590.2 Accepted alive Link to Nucleotide Sequence:NM_010460.2Link to Protein Sequence:NP_034590.2Re-query CCDS DB by Nucleotide ID:NM_010460Re-query CCDS DB by Protein ID:NP_034590Link to BLAST:NP_034590.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034590.2 217 P09024 217 100% 0 0

Chromosomal Locations for CCDS 25294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96286728 96287127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96289377 96289630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGAGTTCATTGTATTATGCGAATGCTTTATTTTCTAAATATCCAGCCGCAAGTTCGGTTTTCGCTCCAG
GAGCCTTCCCCGAACAAACTTCTTGCGCCTTTGCTTCCAACCCCCAGCGCCCGGGCTATGGAGCAGGTCC
GGGCGCTCCTTTCTCCGCCTCGGTGCAGGGTCTGTACTCCGGCGGGGGGGCCATGGCGGGCCAGAGCGCG
GCTGGCGTCTATGCGGCCGGCTACGGGCTCGAACCGAGTTCCTTCAACATGCACTGCGCGCCCTTTGAGC
AGAACCTCTCCGGGGTGTGTCCGGGCGACCCCGCCAAGGCGGCTGGCGCCAAGGAGCAGAGGGACTCGGA
CTTGGCGGCCGAGAGTAACTTCCGGATCTACCCCTGGATGCGAAGCTCAGGGCCTGACCGAAAGCGAGGC
CGCCAGACCTACACGCGCTACCAGACCCTGGAGCTGGAGAAAGAATTTCACTACAATCGCTACCTGACTC
GGCGGAGGCGCATCGAGATCGCGCACACGCTCTGCCTCACCGAAAGACAGATCAAGATCTGGTTTCAGAA
CCGGCGCATGAAGTGGAAAAAGGAGAACAAAACCTCAGGACCGGGAACCACCGGCCAGGACAAGGCGGAA
GCGGAGGAGGAGGAGGAAGAGTGA

Translation (217 aa):
MSSLYYANALFSKYPAASSVFAPGAFPEQTSCAFASNPQRPGYGAGPGAPFSASVQGLYSGGGAMAGQSA
AGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDPAKAAGAKEQRDSDLAAESNFRIYPWMRSSGPDRKRG
RQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTSGPGTTGQDKAE
AEEEEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH