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Report for CCDS16821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16821.1 Public Mus musculus 2 Rbbp9 23 108 98 CCDS HistoryNCBI Gene:26450Re-query CCDS DB by CCDS ID:16821.1Re-query CCDS DB by GeneID:26450See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028915.5 ENSMUSP00000028915.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028915.5Link to Ensembl Protein Viewer:ENSMUSP00000028915.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028915Re-query CCDS DB by Protein ID:ENSMUSP00000028915
Original member Current member NCBI NM_015754.2 NP_056569.2 Accepted alive Link to Nucleotide Sequence:NM_015754.2Link to Protein Sequence:NP_056569.2Re-query CCDS DB by Nucleotide ID:NM_015754Re-query CCDS DB by Protein ID:NP_056569Link to BLAST:NP_056569.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056569.2 186 O88851 186 100% 0 0

Chromosomal Locations for CCDS 16821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 144543783 144544009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144544374 144544459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144547994 144548099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144549104 144549146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144550680 144550778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGCGTCCCCCAACAAGGCAGTGATTGTTCCCGGGAACGGAGGCGGGGATGTGGCCACCCACGGCTGGT
ACGGCTGGGTGAAAAAGGGGCTGGAGCAGATTCCTGGTTTCCAGTGTTTGGCTAAAAACATGCCTGACCC
AATTACAGCGCGAGAGAGCATCTGGCTGCCCTTCATGGAGACAGAGCTGCACTGTGACGAGAAGACCATC
ATCATAGGCCACAGTTCCGGGGCCATCGCAGCCATGAGGTATGCAGAGACACATCAGGTATATGCTCTCG
TATTGGTGTCTGCATACACATCAGACTTGGGAGATGAAAATGAGCGTGCAAGTGGGTACTTCAGCCGCCC
CTGGCAGTGGGAGAAGATCAAGGCCAACTGCCCTCACATTGTACAGTTTGGCTCTACTGATGACCCCTTC
CTTCCCTGGAAGGAACAACAAGAAGTAGCAGATAGGCTGGACGCCAAATTGTACAAATTCACTGACCGTG
GTCACTTTCAGAACACAGAGTTCCATGAACTGATTAGTGTGGTGAAGTCTATGCTGAAAGGACCAGAATA
G

Translation (186 aa):
MASPNKAVIVPGNGGGDVATHGWYGWVKKGLEQIPGFQCLAKNMPDPITARESIWLPFMETELHCDEKTI
IIGHSSGAIAAMRYAETHQVYALVLVSAYTSDLGDENERASGYFSRPWQWEKIKANCPHIVQFGSTDDPF
LPWKEQQEVADRLDAKLYKFTDRGHFQNTEFHELISVVKSMLKGPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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