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Report for CCDS34183.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34183.1 Public Homo sapiens 5 GTF2H2 24 110 108 CCDS HistoryNCBI Gene:2966Re-query CCDS DB by CCDS ID:34183.1Re-query CCDS DB by GeneID:2966See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34183.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274400.10 ENSP00000274400.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274400.10Link to Ensembl Protein Viewer:ENSP00000274400.5Re-query CCDS DB by Nucleotide ID:ENST00000274400Re-query CCDS DB by Protein ID:ENSP00000274400
Original member Current member EBI ENST00000330280.11 ENSP00000328901.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000330280.11Link to Ensembl Protein Viewer:ENSP00000328901.6Re-query CCDS DB by Nucleotide ID:ENST00000330280Re-query CCDS DB by Protein ID:ENSP00000328901
Original member Current member NCBI NM_001364567.2 NP_001351496.1 Accepted alive Link to Nucleotide Sequence:NM_001364567.2Link to Protein Sequence:NP_001351496.1Re-query CCDS DB by Nucleotide ID:NM_001364567Re-query CCDS DB by Protein ID:NP_001351496Link to BLAST:NP_001351496.1
Original member Current member NCBI NM_001395387.1 NP_001382316.1 Accepted alive Link to Nucleotide Sequence:NM_001395387.1Link to Protein Sequence:NP_001382316.1Re-query CCDS DB by Nucleotide ID:NM_001395387Re-query CCDS DB by Protein ID:NP_001382316Link to BLAST:NP_001382316.1
Original member Current member NCBI NM_001395388.1 NP_001382317.1 Accepted alive Link to Nucleotide Sequence:NM_001395388.1Link to Protein Sequence:NP_001382317.1Re-query CCDS DB by Nucleotide ID:NM_001395388Re-query CCDS DB by Protein ID:NP_001382317Link to BLAST:NP_001382317.1
Original member Current member NCBI NM_001395391.1 NP_001382320.1 Accepted alive Link to Nucleotide Sequence:NM_001395391.1Link to Protein Sequence:NP_001382320.1Re-query CCDS DB by Nucleotide ID:NM_001395391Re-query CCDS DB by Protein ID:NP_001382320Link to BLAST:NP_001382320.1
Original member Current member NCBI NM_001395392.1 NP_001382321.1 Accepted alive Link to Nucleotide Sequence:NM_001395392.1Link to Protein Sequence:NP_001382321.1Re-query CCDS DB by Nucleotide ID:NM_001395392Re-query CCDS DB by Protein ID:NP_001382321Link to BLAST:NP_001382321.1
Original member Current member NCBI NM_001515.4 NP_001506.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001515.4Link to Protein Sequence:NP_001506.1Re-query CCDS DB by Nucleotide ID:NM_001515Re-query CCDS DB by Protein ID:NP_001506Link to BLAST:NP_001506.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351496.1 395 Q13888-1 395 100% 0 0
NP_001382316.1 395 Q13888-1 395 100% 0 0
NP_001382317.1 395 Q13888-1 395 100% 0 0
NP_001382320.1 395 Q13888-1 395 100% 0 0
NP_001382321.1 395 Q13888-1 395 100% 0 0
NP_001506.1 395 Q13888-1 395 100% 0 0

Chromosomal Locations for CCDS 34183.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 71035677 71035796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71037507 71037546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71041522 71041624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71042181 71042284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71045444 71045507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71048006 71048113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71048762 71048849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71049068 71049158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71055352 71055457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71059690 71059744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71060120 71060170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71060844 71060930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71061272 71061308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71061688 71061765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 71062708 71062763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGATGAAGAACCTGAAAGAACTAAGCGATGGGAAGGAGGCTATGAAAGAACATGGGAGATTCTTAAAG
AAGATGAATCTGGATCACTTAAAGCTACAATAGAAGACATTCTATTCAAGGCAAAGAGAAAAAGAGTATT
TGAGCACCATGGACAAGTTCGACTTGGAATGATGCGCCACCTTTATGTGGTAGTAGATGGATCAAGAACA
ATGGAAGACCAAGATTTAAAGCCTAATAGACTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGG
AATATTTTGATCAAAATCCTATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATT
GACTGAACTTTCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGAAAGCTGTGGATATGACCTGCCAT
GGAGAGCCATCTCTTTATAATTCCCTAAGCATAGCTATGCAGACTCTAAAACACATGCCTGGACATACAA
GTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCTAATATTTATGATCTAATCAA
GACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGATTGTCTGCAGAAGTTCGCGTTTGCACTGTA
CTTGCTCGTGAAACTGGTGGCACGTACCATGTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACAC
ATCATGTTAGTCCTCCTCCTGCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCA
CACCATTGCTTCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAGCTACCTGTTG
AGTGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGGTCTTACCATCATTTGTTTCC
TTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAATGGAGAAAGATTTTGTTATGGATGTCAGGGG
GAATTGAAAGACCAACATGTTTATGTTTGTGCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTT
TTGTTCATGATTCTCTACACTGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA

Translation (395 aa):
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGSRT
MEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKKAVDMTCH
GEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTV
LARETGGTYHVILDESHYKELLTHHVSPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNT
EPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQG
ELKDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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