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Report for CCDS24605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24605.1 Public Mus musculus 11 Or2y1b 23 108 98 CCDS HistoryNCBI Gene:18307Re-query CCDS DB by CCDS ID:24605.1Re-query CCDS DB by GeneID:18307See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24605.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000187570.2 ENSMUSP00000139744.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187570.2Link to Ensembl Protein Viewer:ENSMUSP00000139744.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187570Re-query CCDS DB by Protein ID:ENSMUSP00000139744
Original member Current member EBI ENSMUST00000217290.1 ENSMUSP00000149724.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217290.1Link to Ensembl Protein Viewer:ENSMUSP00000149724.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217290Re-query CCDS DB by Protein ID:ENSMUSP00000149724
Original member Current member NCBI NM_206822.1 NP_996558.1 Accepted alive Link to Nucleotide Sequence:NM_206822.1Link to Protein Sequence:NP_996558.1Re-query CCDS DB by Nucleotide ID:NM_206822Re-query CCDS DB by Protein ID:NP_996558Link to BLAST:NP_996558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996558.1 311 Q60883 311 100% 0 0

Chromosomal Locations for CCDS 24605.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49317548 49318483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGGAACCTTCAATATCAGTTTGGGAGGAGGCTTCATTTTGGTGGGCTTCTCAGACTGGCCTGCACTTG
AACTCATCTTCTTTATTCATATTTTGATTTTCTACTCTATAACTCTCTTTGGCAACACAGCCATCATTGC
TCTCTCCCGAACAGACCTTCGACTACACACCCCCATGTACTTCTTTCTGTCTCACCTCTCCTTCCTGGAC
CTCTGCTTCACCACCAGCACCGTGCCCCAGCTCCTCATCAACCTCCATGGACAAGACAGGACCATCAGCT
ATGGAGGCTGTGTGGCCCAGGTCTTCATATTTCTTGCTCTGGGATCCACAGAGAGTGTGCTCCTGGTGGT
GATGGCTTTTGACCGCTATGCTGCTGTGTGTCGTCCACTGCACTACACGACCATCATGCACCCTGTTCTC
TGCCAGGCATTGGCTATTGCTTCCTGGGTAGGAGGCTTCTTGAACTCTCTGATTCAAACAGGCCTCATGA
TGGCCATGCCACTCTGTGGACATCGACTGAATCACTTCTTCTGTGAGATGCCTGTCTTCCTCAAGTTGGT
CTGTGAAGACACAGGAGGAACAGAGGCCAAGATGTTTGTGGCCAGAGCAGTGATTGTTGCAGTGCCTACC
ATGCTCATTCTAGGCTCCTATGCACAGATTGCTAGGGCGGTGCTGAAGGTCAAGTCAGTAACTGCACGCA
GAAAGGCTGCTGGGACTTGTGGCTCCCACCTCTTGGTGGTTTCTCTGTTCTATGGCTCAGCCATCTACAC
ATACTTACAACCCAAAGACAGCTATTCTGAGAGCAAGGGGAAGTTTGTGGCCCTTTTTTATACTATCATC
ACCCCAATGCTCAACCCTCTGATCTATACCCTGAGAAACAAAGATATGAAGGGGGCTCTGTGGAAGGTAC
TAGGAAGAGCTACAGTCACAGGGTAG

Translation (311 aa):
MGTFNISLGGGFILVGFSDWPALELIFFIHILIFYSITLFGNTAIIALSRTDLRLHTPMYFFLSHLSFLD
LCFTTSTVPQLLINLHGQDRTISYGGCVAQVFIFLALGSTESVLLVVMAFDRYAAVCRPLHYTTIMHPVL
CQALAIASWVGGFLNSLIQTGLMMAMPLCGHRLNHFFCEMPVFLKLVCEDTGGTEAKMFVARAVIVAVPT
MLILGSYAQIARAVLKVKSVTARRKAAGTCGSHLLVVSLFYGSAIYTYLQPKDSYSESKGKFVALFYTII
TPMLNPLIYTLRNKDMKGALWKVLGRATVTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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