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Report for CCDS13819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13819.1 Public Homo sapiens 22 MIF 20 108 85 CCDS HistoryNCBI Gene:4282Re-query CCDS DB by CCDS ID:13819.1Re-query CCDS DB by GeneID:4282See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13819.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000215754 ENSP00000215754 Accepted alive Link to Ensembl Transcript Viewer:ENST00000215754Link to Ensembl Protein Viewer:ENSP00000215754Re-query CCDS DB by Nucleotide ID:ENST00000215754Re-query CCDS DB by Protein ID:ENSP00000215754
Original member Current member EBI,WTSI OTTHUMT00000320009 OTTHUMP00000198465 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000320009Link to Vega Protein Viewer:OTTHUMP00000198465Re-query CCDS DB by Nucleotide ID:OTTHUMT00000320009Re-query CCDS DB by Protein ID:OTTHUMP00000198465
Original member Current member NCBI NM_002415.1 NP_002406.1 Accepted alive Link to Nucleotide Sequence:NM_002415.1Link to Protein Sequence:NP_002406.1Re-query CCDS DB by Nucleotide ID:NM_002415Re-query CCDS DB by Protein ID:NP_002406Link to BLink:NP_002406.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002406.1 115 P14174 115 100% 0 0

Chromosomal Locations for CCDS 13819.1

Assembly GRCh38.p7 (GCF_000001405.33)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 22Link to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22Link to Vega Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 23894475 23894582 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22Link to Vega Genome Browser on chromosome 22
22 23894772 23894944 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22Link to Vega Genome Browser on chromosome 22
22 23895040 23895106 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22Link to Vega Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGCCGATGTTCATCGTAAACACCAACGTGCCCCGCGCCTCCGTGCCGGACGGGTTCCTCTCCGAGCTCA
CC
CAGCAGCTGGCGCAGGCCACCGGCAAGCCCCCCCAGTACATCGCGGTGCACGTGGTCCCGGACCAGCT
C
ATGGCCTTCGGCGGCTCCAGCGAGCCGTGCGCGCTCTGCAGCCTGCACAGCATCGGCAAGATCGGCGGC
GCG
CAGAACCGCTCCTACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCGCATCAGCCCGGACA
G
G
GTCTACATCAACTATTACGACATGAACGCGGCCAATGTGGGCTGGAACAACTCCACCTTCGCCTAA


Translation (115 aa):
MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGG
A
QNRSYSKLLCGLLAERLRISPD
RVYINYYDMNAANVGWNNSTFA



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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