NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28211.1 Public Mus musculus 16 Ift57 23 108 98 CCDS HistoryNCBI Gene:73916Re-query CCDS DB by CCDS ID:28211.1Re-query CCDS DB by GeneID:73916See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046777.10 ENSMUSP00000046645.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046777.10Link to Ensembl Protein Viewer:ENSMUSP00000046645.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000046777Re-query CCDS DB by Protein ID:ENSMUSP00000046645
Original member Current member NCBI NM_028680.3 NP_082956.2 Accepted alive Link to Nucleotide Sequence:NM_028680.3Link to Protein Sequence:NP_082956.2Re-query CCDS DB by Nucleotide ID:NM_028680Re-query CCDS DB by Protein ID:NP_082956Link to BLAST:NP_082956.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082956.2 429 Q8BXG3-1 429 100% 0 0

Chromosomal Locations for CCDS 28211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 49699338 49699549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49701854 49702016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49703150 49703268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49706091 49706181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49711839 49711907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49736672 49736794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49758395 49758466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49759317 49759448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49760954 49761016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49762601 49762667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49763742 49763920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGCCGCCGCGGCCGCGGTGATCCCGCCGTCGGGCTTGGACGATGGGGTGTCTCGGGCTCGCGGGGAAG
GCGCAGGGGAGGCTGTGGTGGAGCGCGGGCCAGGAGCGGCCTACCACATGTTCGTGGTGATGGAAGACTT
AGTGGAGAAGCTGAAGCTGCTCCGCTACGAGGAGGAGCTACTCCGAAAGAGCAATCTGAAGCCCCCGTCC
AGACACTACTTTGCTCTGCCTACCAACCCAGGCGAGCAGTTCTACATGTTTTGCACTCTTGCTGCGTGGC
TGATCAACAAAACTGGCCGTGCCTTTGAGCAGCCTCAAGAATACGACGATCCCAATGCAACTATATCTAA
TATACTCTCTGAGCTTCGCTCTTTTGGGAGAACTGCAGATTTTCCTCCTTCAAAATTAAAGTCTGGTTAC
GGAGAACAAGTGTGCTATGTTCTTGATTGCTTAGCTGAAGAAGCTTTAAAATATATTGGTTTCACTTGGA
AAAGGCCATCATACCCAGTGGAAGAACTAGAAGAAGAAACTGTTCCAGAAGATGATGCCGAGTTAACATT
AAGTAAAGTGGATGAAGAATTTGTGGAAGAGGAGACAGATAATGAAGAAAACTTTATTGATCTCAACGTT
TTAAAGGCCCAGACCTATCGCTTGGACACAAACGAGTCTGCCAAACAAGAAGATATTTTGGAATCTACGA
CAGATGCTGCGGAATGGAGCCTAGAAGTTGAGCGTGTACTACCGCAGCTGAAAGTCACGATTAGGACTGA
CAATAAGGATTGGAGGATCCATGTTGACCAAATGCACCAGCACAAAAGTGGGATTGAATCTGCTCTGAAG
GAGACCAAGGGGTTTTTGGACAAGCTCCATAATGAAATTAGCAGGACTCTGGAAAAGATTGGCAGCCGAG
AAAAGTACATTAACAATCAACTTGAGCACTTGGTTCAAGAATATCGTGGGGCCCAAGCCCAGCTAAGTGA
GGCAAGGGAGCGCTACCAGCAGGGCAATGGCGGAGTAACTGAACGGACCAGACTCCTCTCTGAGGTTACA
GAAGAATTAGAAAAGGTAAAGCAAGAAATGGAAGAGAAGGGCAGCAGCATGACGGACGGCACTCCTTTGG
TGAAGATTAAGCAGAGCTTAACCAAGCTGAAGCAAGAAACTGTTCAGATGGACATTAGAATCGGTGTGGT
GGAGCACACGCTACTTCAGTCAAAACTCAAGGAGAAGTGCAACATGACCAGGGACATGCATGCAGCTGTC
ACCCCAGAGTCAGCAATTGGCTTCTATTAA

Translation (429 aa):
MAAAAAVIPPSGLDDGVSRARGEGAGEAVVERGPGAAYHMFVVMEDLVEKLKLLRYEEELLRKSNLKPPS
RHYFALPTNPGEQFYMFCTLAAWLINKTGRAFEQPQEYDDPNATISNILSELRSFGRTADFPPSKLKSGY
GEQVCYVLDCLAEEALKYIGFTWKRPSYPVEELEEETVPEDDAELTLSKVDEEFVEEETDNEENFIDLNV
LKAQTYRLDTNESAKQEDILESTTDAAEWSLEVERVLPQLKVTIRTDNKDWRIHVDQMHQHKSGIESALK
ETKGFLDKLHNEISRTLEKIGSREKYINNQLEHLVQEYRGAQAQLSEARERYQQGNGGVTERTRLLSEVT
EELEKVKQEMEEKGSSMTDGTPLVKIKQSLTKLKQETVQMDIRIGVVEHTLLQSKLKEKCNMTRDMHAAV
TPESAIGFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH