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Report for CCDS57417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57417.1 Public Mus musculus 6 Ssmem1 23 108 98 CCDS HistoryNCBI Gene:75647Re-query CCDS DB by CCDS ID:57417.1Re-query CCDS DB by GeneID:75647See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031797.10 ENSMUSP00000031797.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031797.10Link to Ensembl Protein Viewer:ENSMUSP00000031797.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031797Re-query CCDS DB by Protein ID:ENSMUSP00000031797
Original member Current member NCBI NM_027073.1 NP_081349.1 Accepted alive Link to Nucleotide Sequence:NM_027073.1Link to Protein Sequence:NP_081349.1Re-query CCDS DB by Nucleotide ID:NM_027073Re-query CCDS DB by Protein ID:NP_081349Link to BLAST:NP_081349.1

Chromosomal Locations for CCDS 57417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30510253 30510291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30517505 30517559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30519412 30519908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGTTCTTTGAAAGAACTGAGAAAAGAGTCACCAGGGAGATGTCTGAGAGCAAACAGGACGAAGACAGCG
GGACCAGTGCGTCACTCAGTAAAGCAAGCAAAGAAACTTCCTGTAAGCGACAAAATAGAGAAGGGTCCTG
GGACTCTTCACTGGTGATGAAGAAACCAAAGCAGAACCAAGTTTCCACAGTAACCGATTCCGAGGTGGCT
TTGGTCAGCGCCTACCTTGAACAAAGACGAGTCAGGCGCCATTCCCAGTTCCTCCGGGTGAATCAGATCC
AGCAAGATAGTGACACCACTGAATGTGACAGCGAGGAATCGAACTCCGGAGCGTCCTCCTGGAAGGAGAG
TGAAAGCGACCATCATCTGTCACCTGCCAATATTAAGAGGAGGAAGTCAGTGTCCAGGCAAAGGGATATG
GAAAACTATGAAGTCAGACAAAGGCCCTGTCTCCACTGCAAAGCCATGAGAACCAGGGAGTGGCTGACAC
GTCACTTCCCACCAAGCGCCTCAGTAACAACCCCCATGAAGGGAGAGATTCAAGAGGAGAATTTGACACC
TGGGACCAACACAAAATTCAGCAAATTTTGA

Translation (196 aa):
MFFERTEKRVTREMSESKQDEDSGTSASLSKASKETSCKRQNREGSWDSSLVMKKPKQNQVSTVTDSEVA
LVSAYLEQRRVRRHSQFLRVNQIQQDSDTTECDSEESNSGASSWKESESDHHLSPANIKRRKSVSRQRDM
ENYEVRQRPCLHCKAMRTREWLTRHFPPSASVTTPMKGEIQEENLTPGTNTKFSKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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