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Report for CCDS52380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52380.1 Public Mus musculus 7 Acsm2 23 108 98 CCDS HistoryNCBI Gene:233799Re-query CCDS DB by CCDS ID:52380.1Re-query CCDS DB by GeneID:233799See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084647.12 ENSMUSP00000081697.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084647.12Link to Ensembl Protein Viewer:ENSMUSP00000081697.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000084647Re-query CCDS DB by Protein ID:ENSMUSP00000081697
Original member Current member NCBI NM_001177978.1 NP_001171449.1 Accepted alive Link to Nucleotide Sequence:NM_001177978.1Link to Protein Sequence:NP_001171449.1Re-query CCDS DB by Nucleotide ID:NM_001177978Re-query CCDS DB by Protein ID:NP_001171449Link to BLAST:NP_001171449.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171449.1 580 Q8K0L3-3 580 100% 0 0

Chromosomal Locations for CCDS 52380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 119563505 119563681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119573113 119573323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119573552 119573759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119575610 119575756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119578082 119578235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119580356 119580435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119580613 119580736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119582706 119582786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119588821 119588922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119591027 119591154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119591248 119591362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119592223 119592342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119595914 119596009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGCATCATCTATGGAAAATTCCAAGACTTTTCACTCTCTGGGGGAATGAGATTTCCTGCCGTACTTTCC
ATATGAATATCAAGAAACTAATACCCATACAGTGGGGCCACCAGGAAGCACCTGCCAAGTTCAACTTCGC
TAGTGATGTGATAGATCACTGGGCCAGCGTAGAGAAGGCTGGCAAGAGATCTTCAGGTCCAGCCCTGTGG
TGGATGAATGGCAGTGGGAAAGAAATAAAGTGGAGCTTCCGAGAACTGAGTGAAGCCAGTAAACAAACGG
CCAATGTTCTCTCGGGAGCCTGTGGCCTACATCGTGGGGACCGTGTGGCAGTAGTGCTTCCCCGAATCCC
AGAGTGGTGGCTGATGATCCTGGGCTGCATGCGGACAGGCCTTGTTTTCATGCCTGGGACCATCCAGATG
AGATCCTCAGACATACTCTACAGGCTGCAGGCATCCAAGGCCAGGGCCATTGTGGCTGGGGACGAAGTAG
CTCAGGAAGTGGATGCTGTGGCCCCTGACTGCTCTTTTCTGAAAATCAAGTTGCTGGTGTCTGAAAACAG
TCGAGAAGGATGGCTAAACTTCAAGGCATTGCTAAAAGAGGCATCCACCATTCATCAGTGTGTGGAGACA
GAAAGCCGAGAATCAGCAGCCATCTACTTCACTAGTGGGACCAGTGGCCCTCCCAAGATGGCAGAACACT
CCCACTGCAGCCTGGGCATCAAGGCCAAGATGGATGCTGCCAGCTGGACAGGCCTGAGTACTTCTGACAT
AATATGGACCATCTCAGACACGGCTTGGATAATGAACATTTTAGGAGCGTTTCTGGAACCTTGGGTATTG
GGAGCATGCATATTTGTCCATCTTTTGCCAAAGTTTGATTCACAAACTGTTCTAAAGGTGCTTTCCAGCT
ATCCCATCAATACCCTGGTGGGTGCCCCCATCATTTACCGGATGTTGCTACAACAGGATCTTTCCAGTTA
CAAATTTCCACATCTGCATAGCTGCTTCAGTGGAGGAGAGACCCTTCTCCCAGAGACTCTGGAGAACTGG
AAAGCCAAGACAGGACTGGAAATCCGAGAAATCTATGGCCAGACAGAAACGGGACTTATCTGCAGAGTTT
CCAGGACAATGAAAGTCAAACCAGGCTACCTGGGAACAGCCTTTGCTCACTATGATGTACAGGTCATAGA
TGAGCAGGGCAATGTTCTGCCCCCTGGCAAGGAAGGAGACATAGCTATCAGGGTGAAGCCCATCTGGCCT
ATCGGCATGTTCTCTGGATATGTGGACAATCCCAAGAAGACACAGGATAATATTCGAGGAGACTTTTGGC
TTATGGGAGACCGGGGAATCAAGGATCCAGAAGGGTATTTCCACTTCATAGGGCGGTCAGACGATATCAT
TAATTCCAGTGGGGCATACTTTTGCAGGTACCGGATTGGACCTTCCGAGGTGGAAAATGCACTGATGGAG
CATCCTGCCGTAAGCGAAACAGCAGTGATCAGCAGCCCAGACCCTTCCAGAGGAGAGGTGGTGAAGGCAT
TTGTGGTCCTAGCCCCTGAATTCCTGTCCCATGACCGAGACCAGCTCACTAAGGTGCTTCAGGAGCACGT
GAAGTCAGTGACAGCACCCTACAAGTACCCCAGGAAGGTGGAGTTCGTCTTAGACCTGCCCAAGACCGTC
ACAGGAAAAATTGAGCGAGCAAAGCTTCGAGCCAAGGAATGGAAAACATCAGGACGAGCCTAG

Translation (580 aa):
MHHLWKIPRLFTLWGNEISCRTFHMNIKKLIPIQWGHQEAPAKFNFASDVIDHWASVEKAGKRSSGPALW
WMNGSGKEIKWSFRELSEASKQTANVLSGACGLHRGDRVAVVLPRIPEWWLMILGCMRTGLVFMPGTIQM
RSSDILYRLQASKARAIVAGDEVAQEVDAVAPDCSFLKIKLLVSENSREGWLNFKALLKEASTIHQCVET
ESRESAAIYFTSGTSGPPKMAEHSHCSLGIKAKMDAASWTGLSTSDIIWTISDTAWIMNILGAFLEPWVL
GACIFVHLLPKFDSQTVLKVLSSYPINTLVGAPIIYRMLLQQDLSSYKFPHLHSCFSGGETLLPETLENW
KAKTGLEIREIYGQTETGLICRVSRTMKVKPGYLGTAFAHYDVQVIDEQGNVLPPGKEGDIAIRVKPIWP
IGMFSGYVDNPKKTQDNIRGDFWLMGDRGIKDPEGYFHFIGRSDDIINSSGAYFCRYRIGPSEVENALME
HPAVSETAVISSPDPSRGEVVKAFVVLAPEFLSHDRDQLTKVLQEHVKSVTAPYKYPRKVEFVLDLPKTV
TGKIERAKLRAKEWKTSGRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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