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Report for CCDS11835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11835.1 Public Homo sapiens 18 TGIF1 24 110 108 CCDS HistoryNCBI Gene:7050Re-query CCDS DB by CCDS ID:11835.1Re-query CCDS DB by GeneID:7050See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 11835.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330513.10 ENSP00000327959.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000330513.10Link to Ensembl Protein Viewer:ENSP00000327959.6Re-query CCDS DB by Nucleotide ID:ENST00000330513Re-query CCDS DB by Protein ID:ENSP00000327959
Original member Current member EBI ENST00000345133.9 ENSP00000343969.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345133.9Link to Ensembl Protein Viewer:ENSP00000343969.5Re-query CCDS DB by Nucleotide ID:ENST00000345133Re-query CCDS DB by Protein ID:ENSP00000343969
Original member Current member EBI ENST00000400167.6 ENSP00000383031.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400167.6Link to Ensembl Protein Viewer:ENSP00000383031.2Re-query CCDS DB by Nucleotide ID:ENST00000400167Re-query CCDS DB by Protein ID:ENSP00000383031
Original member Current member EBI ENST00000405385.7 ENSP00000384970.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405385.7Link to Ensembl Protein Viewer:ENSP00000384970.2Re-query CCDS DB by Nucleotide ID:ENST00000405385Re-query CCDS DB by Protein ID:ENSP00000384970
Original member Current member EBI ENST00000401449.5 ENSP00000385206.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401449.5Link to Ensembl Protein Viewer:ENSP00000385206.1Re-query CCDS DB by Nucleotide ID:ENST00000401449Re-query CCDS DB by Protein ID:ENSP00000385206
Original member Current member EBI ENST00000548489.6 ENSP00000447747.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000548489.6Link to Ensembl Protein Viewer:ENSP00000447747.2Re-query CCDS DB by Nucleotide ID:ENST00000548489Re-query CCDS DB by Protein ID:ENSP00000447747
Original member Current member EBI ENST00000472042.1 ENSP00000449501.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000472042.1Link to Ensembl Protein Viewer:ENSP00000449501.1Re-query CCDS DB by Nucleotide ID:ENST00000472042Re-query CCDS DB by Protein ID:ENSP00000449501
Original member Current member EBI ENST00000551541.5 ENSP00000450025.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000551541.5Link to Ensembl Protein Viewer:ENSP00000450025.1Re-query CCDS DB by Nucleotide ID:ENST00000551541Re-query CCDS DB by Protein ID:ENSP00000450025
Original member Current member NCBI NM_001278686.3 NP_001265615.1 Accepted alive Link to Nucleotide Sequence:NM_001278686.3Link to Protein Sequence:NP_001265615.1Re-query CCDS DB by Nucleotide ID:NM_001278686Re-query CCDS DB by Protein ID:NP_001265615Link to BLAST:NP_001265615.1
Original member Current member NCBI NM_001374396.1 NP_001361325.1 Accepted alive Link to Nucleotide Sequence:NM_001374396.1Link to Protein Sequence:NP_001361325.1Re-query CCDS DB by Nucleotide ID:NM_001374396Re-query CCDS DB by Protein ID:NP_001361325Link to BLAST:NP_001361325.1
Original member Current member NCBI NM_001374397.1 NP_001361326.1 Accepted alive Link to Nucleotide Sequence:NM_001374397.1Link to Protein Sequence:NP_001361326.1Re-query CCDS DB by Nucleotide ID:NM_001374397Re-query CCDS DB by Protein ID:NP_001361326Link to BLAST:NP_001361326.1
Original member Current member NCBI NM_170695.5 NP_733796.3 Accepted alive Link to Nucleotide Sequence:NM_170695.5Link to Protein Sequence:NP_733796.3Re-query CCDS DB by Nucleotide ID:NM_170695Re-query CCDS DB by Protein ID:NP_733796Link to BLAST:NP_733796.3
Original member Current member NCBI NM_173209.3 NP_775301.1 Accepted alive Link to Nucleotide Sequence:NM_173209.3Link to Protein Sequence:NP_775301.1Re-query CCDS DB by Nucleotide ID:NM_173209Re-query CCDS DB by Protein ID:NP_775301Link to BLAST:NP_775301.1
Original member Current member NCBI NM_173210.4 NP_775302.1 Accepted alive Link to Nucleotide Sequence:NM_173210.4Link to Protein Sequence:NP_775302.1Re-query CCDS DB by Nucleotide ID:NM_173210Re-query CCDS DB by Protein ID:NP_775302Link to BLAST:NP_775302.1
Original member Current member NCBI NM_173211.2 NP_775303.1 Accepted alive Link to Nucleotide Sequence:NM_173211.2Link to Protein Sequence:NP_775303.1Re-query CCDS DB by Nucleotide ID:NM_173211Re-query CCDS DB by Protein ID:NP_775303Link to BLAST:NP_775303.1
Original member Current member NCBI NM_174886.3 NP_777480.1 Accepted alive Link to Nucleotide Sequence:NM_174886.3Link to Protein Sequence:NP_777480.1Re-query CCDS DB by Nucleotide ID:NM_174886Re-query CCDS DB by Protein ID:NP_777480Link to BLAST:NP_777480.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265615.1 252 Q15583-4 252 100% 0 0
NP_001361325.1 252 Q15583-4 252 100% 0 0
NP_001361326.1 252 Q15583-4 252 100% 0 0
NP_733796.3 252 Q15583-4 252 100% 0 0
NP_775301.1 252 Q15583-4 252 100% 0 0
NP_775302.1 252 Q15583-4 252 100% 0 0
NP_775303.1 252 Q15583-4 252 100% 0 0
NP_777480.1 252 Q15583-4 252 100% 0 0

Chromosomal Locations for CCDS 11835.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3456398 3456580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3457365 3457940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGGACATTCCCTTGGACCTTTCTTCATCCGCTGGCTCAGGCAAGAGAAGGAGAAGGGGCAACCTACCCA
AGGAGTCTGTGCAGATTCTTCGGGATTGGCTGTATGAGCACCGTTACAATGCCTATCCTTCAGAGCAAGA
AAAAGCGTTGCTGTCCCAGCAAACACACCTGTCTACGCTACAGGTCTGTAACTGGTTCATCAACGCCCGC
CGCAGGCTCCTCCCTGACATGCTGAGAAAGGATGGCAAAGATCCAAATCAGTTCACAATTTCCCGCCGTG
GGGCCAAGATTTCTGAAACGAGCTCTGTGGAGTCCGTGATGGGCATCAAAAACTTCATGCCAGCTCTAGA
GGAGACCCCATTTCATTCCTGTACAGCTGGGCCAAACCCAACCCTAGGGAGGCCACTGTCTCCTAAGCCG
TCATCCCCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCCATACCACTGTGACTGCATTGAAAGATG
TCCCTTTCTCTCTCTGCCAGTCGGTCGGTGTGGGACAAAACACAGATATACAGCAGATAGCGGCCAAAAA
CTTCACAGACACCTCTCTCATGTACCCAGAGGACACTTGTAAATCTGGACCAAGTACGAATACACAGAGT
GGTCTTTTCAACACTCCTCCCCCTACTCCACCGGACCTCAACCAGGACTTCAGTGGATTTCAGCTTCTAG
TGGATGTTGCACTCAAACGGGCTGCAGAGATGGAGCTTCAGGCAAAACTTACAGCTTAA

Translation (252 aa):
MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINAR
RRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKP
SSPGSVLARPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQS
GLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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