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Report for CCDS6187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6187.1 Public Homo sapiens 8 TRIM55 24 110 108 CCDS HistoryNCBI Gene:84675Re-query CCDS DB by CCDS ID:6187.1Re-query CCDS DB by GeneID:84675See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6187.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276573.11 ENSP00000276573.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000276573.11Link to Ensembl Protein Viewer:ENSP00000276573.7Re-query CCDS DB by Nucleotide ID:ENST00000276573Re-query CCDS DB by Protein ID:ENSP00000276573
Original member Current member NCBI NM_033058.3 NP_149047.2 Accepted alive Link to Nucleotide Sequence:NM_033058.3Link to Protein Sequence:NP_149047.2Re-query CCDS DB by Nucleotide ID:NM_033058Re-query CCDS DB by Protein ID:NP_149047Link to BLAST:NP_149047.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149047.2 540 Q9BYV6-3 540 100% 0 0

Chromosomal Locations for CCDS 6187.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 66127269 66127436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66128304 66128476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66134990 66135155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66137095 66137190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66149645 66149878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66150217 66150239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66150342 66150466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66152377 66152627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66154047 66154334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66155623 66155710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66174471 66174481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGAGCGCATCTCTGAATTACAAATCTTTTTCCAAAGAGCAGCAGACCATGGATAACTTAGAGAAGCAAC
TCATCTGTCCCATCTGCTTAGAGATGTTCACGAAACCTGTGGTGATTCTCCCTTGTCAGCACAACCTGTG
TAGGAAATGTGCCAGTGATATTTTCCAGGCCTCTAACCCGTATTTGCCCACAAGAGGAGGTACCACCATG
GCATCAGGGGGCCGATTCCGCTGCCCATCCTGTAGACATGAAGTGGTTTTGGATAGACATGGGGTATATG
GACTTCAGAGGAACCTGCTGGTGGAAAATATCATTGACATCTACAAGCAGGAGTCCACCAGGCCAGAAAA
GAAATCCGACCAGCCCATGTGCGAGGAACATGAAGAGGAGCGCATCAACATCTACTGTCTGAACTGCGAA
GTACCCACCTGCTCTCTGTGCAAGGTGTTTGGTGCACACAAAGACTGCCAGGTGGCTCCCCTCACTCATG
TGTTCCAGAGACAGAAGTCTGAGCTCAGTGATGGCATCGCCATCCTCGTGGGCAGCAACGATCGAGTCCA
GGGAGTGATCAGCCAGCTGGAAGACACCTGCAAAACTATCGAGGAATGTTGCAGAAAACAGAAACAAGAG
CTTTGTGAGAAGTTTGATTACCTGTATGGCATTTTGGAGGAGAGGAAGAATGAAATGACCCAAGTCATTA
CCCGAACCCAAGAGGAGAAACTGGAACATGTCCGTGCTCTGATCAAAAAGTATTCTGATCATTTGGAGAA
CGTCTCAAAGTTGGTTGAGTCAGGAATTCAGTTTATGGATGAGCCAGAAATGGCAGTGTTTCTGCAGAAT
GCCAAAACCCTGCTAAAAAAAATCTCGGAAGCATCAAAGGCATTTCAGATGGAGAAAATAGAACATGGCT
ATGAGAACATGAACCACTTCACAGTCAACCTCAATAGAGAAGAAAAGATAATACGTGAAATTGACTTTTA
CAGAGAAGATGAAGATGAAGAAGAAGAAGAAGGCGGAGAAGGAGAAAAAGAAGGAGAAGGAGAAGTGGGA
GGAGAAGCAGTAGAAGTGGAAGAGGTAGAAAATGTTCAAACAGAGTTTCCAGGAGAAGATGAAAACCCAG
AAAAAGCTTCAGAGCTCTCTCAGGTGGAGCTGCAGGCTGCCCCTGGGGCACTTCCAGTTTCCTCTCCAGA
GCCACCTCCAGCCCTGCCACCTGCTGCGGATGCCCCTGTGACACAGGGGGAGGTTGTACCCACTGGCTCT
GAGCAGACCACAGAGTCTGAAACTCCAGTCCCTGCAGCAGCAGAAACTGCGGATCCCTTGTTTTACCCTA
GTTGGTATAAAGGCCAAACCCGGAAAGCCACCACCAACCCACCTTGCACCCCAGGGAGCGAAGGTCTGGG
GCAAATAGGGCCTCCAGGTTCTGAGGATTCGAATGTACGGAAGGCAGAAGTGGCAGCAGCCGCAGCGAGT
GAGAGGGCAGCTGTGAGTGGTAAGGAAACTAGTGCACCTGCAGCTACTTCTCAGGAGTTAGTAATCTGCC
TAGCGCTTTTGGCTTTTCTTATTCTTCACTACATCTGGAGTCAGATTCAGTGCTTGATTTTTACTTTAAT
GGATTGGATTTGA

Translation (540 aa):
MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTM
ASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSDQPMCEEHEEERINIYCLNCE
VPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSNDRVQGVISQLEDTCKTIEECCRKQKQE
LCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQN
AKTLLKKISEASKAFQMEKIEHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVG
GEAVEVEEVENVQTEFPGEDENPEKASELSQVELQAAPGALPVSSPEPPPALPPAADAPVTQGEVVPTGS
EQTTESETPVPAAAETADPLFYPSWYKGQTRKATTNPPCTPGSEGLGQIGPPGSEDSNVRKAEVAAAAAS
ERAAVSGKETSAPAATSQELVICLALLAFLILHYIWSQIQCLIFTLMDWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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