NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23787.1 Public Mus musculus 10 Tube1 23 108 98 CCDS HistoryNCBI Gene:71924Re-query CCDS DB by CCDS ID:23787.1Re-query CCDS DB by GeneID:71924See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23787.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019991.7 ENSMUSP00000019991.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019991.7Link to Ensembl Protein Viewer:ENSMUSP00000019991.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019991Re-query CCDS DB by Protein ID:ENSMUSP00000019991
Original member Current member NCBI NM_028006.2 NP_082282.1 Accepted alive Link to Nucleotide Sequence:NM_028006.2Link to Protein Sequence:NP_082282.1Re-query CCDS DB by Nucleotide ID:NM_028006Re-query CCDS DB by Protein ID:NP_082282Link to BLAST:NP_082282.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082282.1 475 Q9D6T1 475 100% 0 0

Chromosomal Locations for CCDS 23787.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 39134083 39134107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39134206 39134279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39134988 39135040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39137134 39137191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39140823 39140938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39142255 39142376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39144375 39144562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39144756 39144931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39145573 39145713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39147312 39147452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39147763 39147937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39149459 39149617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGACCCAGTCGGTGGTCGTACAGGTCGGACAGTGCGGGAACCAGATCGGCTGCTGCTTCTGGGACCTGG
CGCTGAGGGAGCACGCAGCGGTCAACCAGAAAGGAATTTATGACGACGCTATAAGCAGCTTCTTCAGGAA
TGTGGATACCAGAGCTGTTGGGGATGGTGGCAGTATTTCCAAAGGAAGAATATCTTCTCTAAAAGCACGG
GCTGTTTTGATTGACATGGAAGAAGGCGTAGTGAATGAAATTCTCCAAGGCCCACTGAGAGACGTGTTTG
ATAGCAAACAGCTCATCACTGATATCTCTGGCTCGGGAAATAATTGGGCTGTGGGTCACAAAGTTTTTGG
ATGTCTTTACCGGGAACAGATTTTAGAGAAACTGCGGAAGTCGGCAGAGCAGTGCGATTGCTTACAGTGC
TTCTTCATCATCCACTCCATGGGCGGAGGAACAGGCTCTGGGCTTGGCACATTTCTGTTAAAGGTTCTTG
AAGATGAATTCCCAGAAGTGTACCGGTTTGTGACAGCGGTTTATCCTTCCAGTGAAGACGATGTCATCAC
CTCGCCTTATAACAGTATGCTGGCCATGAAGGAACTGAATGAGCATGCAGACTGTGTGCTGCCCATTGAC
AACCAATCTTTATTTGACATCATTAGCAAAATTGATCTTGTGGTAAATTCTGGAAAGTTGGGCTCAGCTG
TGAAGCCTAAGAGTCTCATTACGTCGAACATGGGGGCTGTTAAAAAGCACCACAAGAAGCCCTTCGACGC
CATGAACAACATTGTGGCGAACCTGCTCCTCAGCCTGACAAGCTCTGCGAGGTTTGAGGGCTCCCTCAAT
ATGGACCTGAATGAGATCAGCATGAACTTGGTTCCTTTCCCGAAGCTTCATTATCTCGTGTCAAGCCTGA
CACCTCTGTACACGCTGGCCGATGTTAACATTCCCCCCCGAAGACTGGATCAGATGTTTTCAGACGCCTT
TAGTAAGGATCACCAGCTCATCCAAGCAGACCCCAGACATAGCCTCTACCTTGCCTGTGCCCTCATCGTT
AGAGGAAACGTACAGATTTCCGATCTTCGCAGAAATATTGAAAGATTAAAACCTGCTCTGCAGTTTGTCT
CCTGGAATCAAGAAGGCTGGAAGACCAGCCTGTGTTCTGTACCGCCTGTGGGCCACTCGCATTCTCTGTT
AGCTTTAGCAAATAACACGTGTGTGAAGCCTACCTTCATGGAGCTGAGAGAAAGGTTCACAAGGCTCTAC
AAGAAAAAGGCTCACCTCCATCACTACCTGCAAGTTGATGGGATGGAGGAAAGCACTTTTACGGAAGCTG
TGTCCTCTCTGTCAGCGCTCATACAGGAGTACAGTGACCTCGATGCCACAAAGAGCCTGCCTGTGCCAGA
TGTGCCCAGGTTGAGTGTGGCCTTGTGA

Translation (475 aa):
MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKAR
AVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQC
FFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSEDDVITSPYNSMLAMKELNEHADCVLPID
NQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLTSSARFEGSLN
MDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIV
RGNVQISDLRRNIERLKPALQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELRERFTRLY
KKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEYSDLDATKSLPVPDVPRLSVAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH