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Report for CCDS19268.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19268.1 Public Mus musculus 5 Fgfbp1 21 106 86 CCDS HistoryNCBI Gene:14181Re-query CCDS DB by CCDS ID:19268.1Re-query CCDS DB by GeneID:14181See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 19268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member EBI ENSMUST00000061299 ENSMUSP00000056900 Accepted not alive Link to Ensembl Transcript Viewer:ENSMUST00000061299Link to Ensembl Protein Viewer:ENSMUSP00000056900Re-query CCDS DB by Nucleotide ID:ENSMUST00000061299Re-query CCDS DB by Protein ID:ENSMUSP00000056900
Original member EBI ENSMUST00000199894 ENSMUSP00000142520 Accepted not alive Link to Ensembl Transcript Viewer:ENSMUST00000199894Link to Ensembl Protein Viewer:ENSMUSP00000142520Re-query CCDS DB by Nucleotide ID:ENSMUST00000199894Re-query CCDS DB by Protein ID:ENSMUSP00000142520
Original member EBI ENSMUST00000199481 ENSMUSP00000143011 Accepted not alive Link to Ensembl Transcript Viewer:ENSMUST00000199481Link to Ensembl Protein Viewer:ENSMUSP00000143011Re-query CCDS DB by Nucleotide ID:ENSMUST00000199481Re-query CCDS DB by Protein ID:ENSMUSP00000143011
Original member Current member EBI OTTMUST00000133820 OTTMUSP00000071066 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000133820Link to Vega Protein Viewer:OTTMUSP00000071066Re-query CCDS DB by Nucleotide ID:OTTMUST00000133820Re-query CCDS DB by Protein ID:OTTMUSP00000071066
Original member Current member EBI OTTMUST00000133821 OTTMUSP00000071067 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000133821Link to Vega Protein Viewer:OTTMUSP00000071067Re-query CCDS DB by Nucleotide ID:OTTMUST00000133821Re-query CCDS DB by Protein ID:OTTMUSP00000071067
Original member Current member EBI OTTMUST00000133822 OTTMUSP00000071068 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000133822Link to Vega Protein Viewer:OTTMUSP00000071068Re-query CCDS DB by Nucleotide ID:OTTMUST00000133822Re-query CCDS DB by Protein ID:OTTMUSP00000071068
Original member Current member NCBI NM_001271616.1 NP_001258545.1 Accepted alive Link to Nucleotide Sequence:NM_001271616.1Link to Protein Sequence:NP_001258545.1Re-query CCDS DB by Nucleotide ID:NM_001271616Re-query CCDS DB by Protein ID:NP_001258545Link to BLAST:NP_001258545.1
Original member Current member NCBI NM_008009.4 NP_032035.2 Accepted alive Link to Nucleotide Sequence:NM_008009.4Link to Protein Sequence:NP_032035.2Re-query CCDS DB by Nucleotide ID:NM_008009Re-query CCDS DB by Protein ID:NP_032035Link to BLAST:NP_032035.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258545.1 251 O70514 251 100% 0 0
NP_032035.2 251 O70514 251 100% 0 0

Chromosomal Locations for CCDS 19268.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43979193 43979948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGAGACTCCACAGCCTCATCCTGCTCTCCTTCCTTCTCCTGGCTACTCAGGCGTTCTCAGAAAAGGTCA
GAAAGAGAGCCAAGAACGCACCACACAGCACAGCGGAGGAGGGGGTAGAGGGTTCAGCTCCCTCGTTAGG
GAAGGCCCAGAATAAGCAGAGAAGCAGGACATCTAAATCTCTGACGCATGGCAAGTTTGTCACCAAAGAC
CAAGCCACATGCAGATGGGCTGTGACTGAGGAGGAGCAGGGCATCAGCCTGAAGGTCCAGTGCACACAAG
CCGATCAGGAGTTTTCTTGTGTTTTTGCTGGTGACCCAACTGACTGCCTTAAACACGACAAAGACCAGAT
CTACTGGAAACAGGTTGCCCGCACGCTGCGCAAACAGAAAAATATCTGCAGGAACGCCAAGAGTGTCTTG
AAGACCAGAGTGTGCAGAAAGAGATTTCCAGAGTCTAACCTCAAGCTGGTGAACCCCAACGCACGTGGAA
ACACGAAGCCCAGGAAGGAGAAAGCAGAGGTCTCCGCAAGGGAGCACAACAAGGTCCAAGAAGCTGTCTC
CACGGAGCCAAACAGGGTCAAAGAAGACATCACACTCAATCCAGCTGCGACCCAGACCATGGCCATTAGA
GATCCAGAGTGTCTAGAGGATCCAGATGTGCTCAACCAGAGGAAGACCGCCCTGGAGTTCTGTGGGGAAT
CTTGGAGCTCCATTTGCACATTCTTCCTCAACATGTTACAGGCGACATCATGCTAA

Translation (251 aa):
MRLHSLILLSFLLLATQAFSEKVRKRAKNAPHSTAEEGVEGSAPSLGKAQNKQRSRTSKSLTHGKFVTKD
QATCRWAVTEEEQGISLKVQCTQADQEFSCVFAGDPTDCLKHDKDQIYWKQVARTLRKQKNICRNAKSVL
KTRVCRKRFPESNLKLVNPNARGNTKPRKEKAEVSAREHNKVQEAVSTEPNRVKEDITLNPAATQTMAIR
DPECLEDPDVLNQRKTALEFCGESWSSICTFFLNMLQATSC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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