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Report for CCDS11828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11828.1 Public Homo sapiens 18 EMILIN2 24 110 108 CCDS HistoryNCBI Gene:84034Re-query CCDS DB by CCDS ID:11828.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254528.4 ENSP00000254528.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254528.4Link to Ensembl Protein Viewer:ENSP00000254528.3Re-query CCDS DB by Nucleotide ID:ENST00000254528Re-query CCDS DB by Protein ID:ENSP00000254528
Original member Current member NCBI NM_032048.3 NP_114437.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032048.3Link to Protein Sequence:NP_114437.2Re-query CCDS DB by Nucleotide ID:NM_032048Re-query CCDS DB by Protein ID:NP_114437Link to BLAST:NP_114437.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114437.2 1053 Q9BXX0 1053 100% 0 0

Chromosomal Locations for CCDS 11828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 2847189 2847322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2847809 2847931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2884964 2885139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2890561 2892486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2906783 2907085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2908943 2908975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2909691 2909819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2913067 2913404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3162 nt):
ATGTGGCAGCCCAGACGGCCCTGGCCCCGCGTGCCCTGGCGCTGGGCGCTGGCGCTGCTGGCCCTGGTTG
GCGCGGGGCTGTGCCACGCCGGCCCGCAGCCCGGGTATCCCGCGCGGCCCAGCGCCAGGAACAAGAACTG
GTGCGCCTACATCGTGAACAAGAATGTGAGCTGCTCCGTGCTGGAGGGAAGTGAGAGTTTTATTCAGGCT
CAGTACAACTGTGCCTGGAACCAGATGCCCTGTCCGTCGGCGCTGGTGTATCGAGTGAACTTCAGACCTA
GATATGTCACTAGGTATAAGACAGTGACACAGTTGGAATGGAGGTGCTGTCCTGGCTTTAGAGGGGGAGA
TTGCCAAGAAGGTCCCAAAGACCCCGTGAAGACCCTCCGCCCCACGCCGGCTCGGCCTCGAAACAGCTTG
AAGAAAGCCACAGATAATGAACCCAGCCAATTCTCAGAGCCCAGGAAGACTTTGTCCCCAACTGGTACAG
CACAACCAAGCTGGGGGGTAGATCCAAAAGAGGGGCCTCAGGAACTTCAGGAAAAGAAGATACAGGTGCT
AGAGGAGAAGGTTCTTCGACTCACAAGGACGGTTCTTGACCTCCAGTCTTCCCTTGCTGGAGTGAGTGAA
AATCTCAAACATGCCACTCAGGATGATGCCAGTAGAACACGGGCACCAGGGCTCAGCAGCCAGCACCCCA
AGCCTGACACCACTGTTAGTGGAGACACAGAAACGGGCCAGAGTCCTGGTGTCTTCAACACTAAGGAATC
TGGCATGAAGGACATCAAGTCTGAATTGGCTGAAGTCAAAGATACTCTAAAGAACAAAAGTGACAAGCTG
GAAGAGCTGGATGGAAAAGTGAAGGGCTACGAAGGGCAGCTCAGACAGCTCCAGGAAGCAGCTCAGGGCC
CGACGGTGACCATGACAACCAACGAACTCTACCAAGCCTATGTGGACAGTAAGATCGACGCCCTGAGAGA
GGAGCTCATGGAGGGCATGGACAGAAAGCTGGCTGACCTGAAAAACTCATGTGAGTACAAGCTCACTGGC
CTCCAGCAGCAGTGTGATGACTATGGGAGCAGCTACCTGGGAGTGATAGAGCTCATAGGGGAGAAGGAAA
CAAGCCTGAGAAAAGAAATAAATAACCTCCGAGCCCGGCTACAGGAGCCTTCAGCCCAGGCAAATTGCTG
CGACAGTGAAAAGAATGGTGACATTGGTCAACAGATCAAGACATTGGACCAGAAAATCGAGAGAGTTGCT
GAAGCCACCAGAATGCTGAATGGAAGACTGGACAATGAGTTTGACCGCCTTATAGTTCCAGAGCCAGATG
TGGATTTTGATGCAAAATGGAATGAACTCGATGCAAGGATCAATGTGACGGAGAAGAACGCTGAAGAACA
TTGCTTTTACATTGAGGAAACCCTTCGGGGCGCCATTAATGGAGAGGTGGGTGACTTGAAGCAGCTTGTT
GATCAGAAAATACAGTCTCTGGAAGACCGTCTGGGGAGCGTTCTCCTACAGATGACCAATAACACTGGTG
CAGAGCTCAGTCCCCCAGGGGCAGCAGCCCTGCCAGGAGTGTCAGGGTCAGGAGATGAACGGGTCATGAT
GGAATTAAACCACCTGAAGGACAAAGTTCAAGTTGTTGAAGACATTTGCCTGCTGAACATCCAGGGAAAG
CCTCATGGGATGGAAGGTGCCTTGCCAAACAGGGAAGACCGCGCAGTACGCGACAGCCTGCACCTTTTGA
AATCTCTCAACGACACGATGCACAGGAAGTTTCAAGAAACCGAACAAACCATCCAGAAACTTCAACAGGA
TTTTAGTTTTCTTTATTCTCAATTAAACCACACAGAAAATGATGTGACTCATCTTCAAAAGGAAATGAGC
AATTGTAGAGCAGGTGAAAACGCTGGCATGGGTAGGTTCACTAAGGTGGGTGAGCAAGAAAGGACAGTGG
ACACCCTGCCGTCCCCCCAGCACCCCGTGGCTCATTGCTGCAGTCAGCTGGAGGAGAGGTGGCAGAGGTT
GCAGAGCCAGGTCATCTCGGAGCTGGATGCTTGTAAGGAATGCACGCAGGGGGTCCAGAGGGAGGTCTCC
ATGGTGGAGGGCAGGGTGTCTCATATGGAGAAAACTTGCAGCAAGCTGGACTCTATCTCAGGAAATCTTC
AGAGGATCAAGGAGGGGCTCAACAAGCATGTCAGCAGCCTGTGGAACTGTGTCAGGCAGATGAACGGAAC
GCTCAGGTCGCATTCCAGAGACATTTCTGGCCTGAAGAATTCAGTCCAGCAGTTCTACAGCCACGTCTTC
CAGATTTCTACTGATTTGCAAGATCTGGTCAAATTTCAGCCATCAGCAAAGGCGCCCTCGCCCCCGCCGC
CCGCAGAGGCCCCGAAGGAGCCGCTGCAGCCCGAGCCCGCCCCGCCGAGGCCCAGCGGCCCCGCAACCGC
AGAGGACCCTGGGCGACGGCCCGTCCTGCCCCAGCGGCCCCCCGAGGAGAGGCCGCCCCAGCCGCCAGGC
TCCACCGGGGTCATCGCGGAGACGGGCCAGGCCGGGCCCCCCGCAGGCGCAGGCGTGTCTGGGCGGGGTC
TGCCGCGGGGCGTGGACGGCCAGACCGGGAGCGGCACCGTCCCCGGCGCAGAAGGCTTCGCGGGCGCACC
AGGATACCCGAAGTCACCTCCTGTAGCTTCCCCAGGAGCTCCGGTGCCTTCTCTGGTGTCTTTTTCTGCG
GGGCTCACCCAGAAGCCTTTCCCCAGTGATGGGGGCGTTGTCCTCTTTAACAAAGTGCTGGTGAACGACG
GGGATGTTTACAACCCCAGCACCGGGGTCTTCACGGCTCCTTATGATGGGCGCTACCTGATCACGGCCAC
CCTCACCCCCGAGAGAGACGCCTACGTGGAAGCAGTGCTGTCGGTCTCCAACGCCAGCGTGGCCCAGCTG
CATACCGCTGGGTACAGGAGAGAGTTCCTGGAATACCACCGCCCTCCAGGAGCTTTGCATACCTGCGGGG
GCCCGGGGGCATTCCACCTCATCGTGCACCTGAAGGCGGGAGATGCAGTCAACGTCGTGGTGACTGGGGG
CAAGCTGGCTCACACAGACTTTGATGAAATGTACTCCACATTTAGTGGGGTTTTCTTATATCCTTTCCTT
TCCCACCTCTAA

Translation (1053 aa):
MWQPRRPWPRVPWRWALALLALVGAGLCHAGPQPGYPARPSARNKNWCAYIVNKNVSCSVLEGSESFIQA
QYNCAWNQMPCPSALVYRVNFRPRYVTRYKTVTQLEWRCCPGFRGGDCQEGPKDPVKTLRPTPARPRNSL
KKATDNEPSQFSEPRKTLSPTGTAQPSWGVDPKEGPQELQEKKIQVLEEKVLRLTRTVLDLQSSLAGVSE
NLKHATQDDASRTRAPGLSSQHPKPDTTVSGDTETGQSPGVFNTKESGMKDIKSELAEVKDTLKNKSDKL
EELDGKVKGYEGQLRQLQEAAQGPTVTMTTNELYQAYVDSKIDALREELMEGMDRKLADLKNSCEYKLTG
LQQQCDDYGSSYLGVIELIGEKETSLRKEINNLRARLQEPSAQANCCDSEKNGDIGQQIKTLDQKIERVA
EATRMLNGRLDNEFDRLIVPEPDVDFDAKWNELDARINVTEKNAEEHCFYIEETLRGAINGEVGDLKQLV
DQKIQSLEDRLGSVLLQMTNNTGAELSPPGAAALPGVSGSGDERVMMELNHLKDKVQVVEDICLLNIQGK
PHGMEGALPNREDRAVRDSLHLLKSLNDTMHRKFQETEQTIQKLQQDFSFLYSQLNHTENDVTHLQKEMS
NCRAGENAGMGRFTKVGEQERTVDTLPSPQHPVAHCCSQLEERWQRLQSQVISELDACKECTQGVQREVS
MVEGRVSHMEKTCSKLDSISGNLQRIKEGLNKHVSSLWNCVRQMNGTLRSHSRDISGLKNSVQQFYSHVF
QISTDLQDLVKFQPSAKAPSPPPPAEAPKEPLQPEPAPPRPSGPATAEDPGRRPVLPQRPPEERPPQPPG
STGVIAETGQAGPPAGAGVSGRGLPRGVDGQTGSGTVPGAEGFAGAPGYPKSPPVASPGAPVPSLVSFSA
GLTQKPFPSDGGVVLFNKVLVNDGDVYNPSTGVFTAPYDGRYLITATLTPERDAYVEAVLSVSNASVAQL
HTAGYRREFLEYHRPPGALHTCGGPGAFHLIVHLKAGDAVNVVVTGGKLAHTDFDEMYSTFSGVFLYPFL
SHL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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