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Report for CCDS37204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37204.1 Public Mus musculus 15 Smarcd1 23 108 98 CCDS HistoryNCBI Gene:83797Re-query CCDS DB by CCDS ID:37204.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37204.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023759.5 ENSMUSP00000023759.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023759.5Link to Ensembl Protein Viewer:ENSMUSP00000023759.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023759Re-query CCDS DB by Protein ID:ENSMUSP00000023759
Original member NCBI NM_031842.2 NP_114030.2 Updated not alive Link to Nucleotide Sequence:NM_031842.2Link to Protein Sequence:NP_114030.2Re-query CCDS DB by Nucleotide ID:NM_031842Re-query CCDS DB by Protein ID:NP_114030
Current member NCBI NM_031842.3 NP_114030.2 Accepted alive Link to Nucleotide Sequence:NM_031842.3Link to Protein Sequence:NP_114030.2Re-query CCDS DB by Nucleotide ID:NM_031842Re-query CCDS DB by Protein ID:NP_114030Link to BLAST:NP_114030.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114030.2 515 Q61466 515 100% 0 0

Chromosomal Locations for CCDS 37204.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99702322 99702498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99703106 99703293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99703591 99703633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99703738 99703860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99704331 99704453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99705627 99705743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99707311 99707412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99707640 99707801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99707885 99707982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99709281 99709416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99711093 99711215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99712159 99712260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99712372 99712425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGCGGCCCGGGCGGGTTTCCAGTCTGTGGCTCCGAGCGGCGGCGCGGGAGCCTCAGGAGGAGCGGGCG
TGGCGGCTGCTCTGGGCCCGGGCGGAACTCCCGGGCCTCCCGTGCGAATGGGCCCGGCGCCGGGTCAAGG
GCTGTACCGCTCTCCGATGCCCGGGGCGGCCTATCCGAGACCAGGTATGCTGCCAGGTAGCCGAATGACA
CCTCAGGGACCTTCCATGGGACCTCCTGGCTATGGGGGGAACCCTTCAGTCCGACCTGGTCTGGCCCAGT
CAGGGATGGACCAGTCCCGCAAGAGACCTGCACCTCAACAGATCCAGCAGGTCCAGCAGCAGGCGGTCCA
AAATCGAAATCACAATGCAAAGAAAAAGAAGATGGCTGACAAAATCCTACCTCAAAGGATTCGGGAACTG
GTCCCAGAATCACAGGCCTACATGGATCTCCTGGCTTTTGAAAGGAAACTGGACCAGACTATTATGAGGA
AGCGGCTAGATATCCAGGAGGCCTTGAAACGTCCCATCAAGCAAAAACGGAAGCTGCGAATTTTCATTTC
TAACACGTTCAATCCGGCTAAGTCGGACGCGGAGGATGGGGAAGGGACGGTGGCTTCCTGGGAGCTCCGG
GTAGAAGGCCGGCTCCTGGAGGACGCGGCCTTGTCCAAATATGACGCCACCAAGCAAAAGAGAAAGTTCT
CTTCCTTTTTTAAGTCCTTGGTGATCGAACTGGACAAAGACCTCTATGGCCCAGACAACCATCTGGTAGA
ATGGCACAGGACCGCCACTACCCAGGAGACCGATGGCTTCCAGGTGAAGCGGCCAGGAGATGTGAATGTA
CGGTGTACTGTCCTGCTGATGCTGGACTACCAGCCCCCCCAGTTTAAATTAGACCCTCGCCTGGCTCGGC
TCTTGGGCATCCATACCCAGACACGTCCAGTGATCATCCAAGCACTGTGGCAGTATATTAAAACACACAA
GCTCCAGGACCCTCACGAGCGAGAGTTTGTTCTCTGTGACAAGTACCTCCAGCAGATCTTTGAATCTCAG
CGGATGAAGTTCTCAGAGATCCCTCAGCGGCTCCACGCCTTGCTTATGCCACCAGAGCCCATCATCATCA
ATCATGTCATCAGTGTGGACCCAAATGACCAGAAAAAGACCGCGTGCTATGACATTGACGTGGAGGTGGA
TGACACTCTGAAGACCCAGATGAACTCTTTCCTGTTGTCCACTGCCAGCCAGCAGGAGATCGCCACTCTA
GACAACAAGATCCATGAGACGATAGAGACCATCAACCAGCTGAAGACCCAGCGAGAGTTCATGTTGAGCT
TTGCCCGAGACCCTCAGGGTTTCATCAATGATTGGCTTCAGTCCCAGTGCAGGGACCTCAAGACGATGAC
TGATGTGGTGGGTAACCCGGAAGAGGAGCGTCGTGCTGAGTTCTACTTCCAGCCCTGGGCTCAGGAGGCT
GTGTGCCGATACTTCTACTCCAAGGTGCAGCAGAGGCGGCAAGAGTTAGAGCAAGCCCTGGGAATCCGAA
ACACATAG

Translation (515 aa):
MAARAGFQSVAPSGGAGASGGAGVAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMT
PQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIREL
VPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELR
VEGRLLEDAALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNV
RCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ
RMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEA
VCRYFYSKVQQRRQELEQALGIRNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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