NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33173.1 Public Homo sapiens 2 LBH 24 110 108 CCDS HistoryNCBI Gene:81606Re-query CCDS DB by CCDS ID:33173.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33173.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395323.9 ENSP00000378733.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395323.9Link to Ensembl Protein Viewer:ENSP00000378733.3Re-query CCDS DB by Nucleotide ID:ENST00000395323Re-query CCDS DB by Protein ID:ENSP00000378733
Original member Current member NCBI NM_030915.4 NP_112177.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030915.4Link to Protein Sequence:NP_112177.2Re-query CCDS DB by Nucleotide ID:NM_030915Re-query CCDS DB by Protein ID:NP_112177Link to BLAST:NP_112177.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112177.2 105 Q53QV2 105 100% 0 0

Chromosomal Locations for CCDS 33173.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30231739 30231764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30234405 30234507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30257433 30257621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGTCTATATATTTCCCCATTCACTGCCCCGACTATCTGAGATCGGCCAAGATGACTGAGGTGATGATGA
ACACCCAGCCCATGGAGGAGATCGGCCTCAGCCCCCGCAAGGATGGCCTTTCCTACCAGATCTTCCCAGA
CCCGTCAGATTTTGACCGCTGCTGCAAACTGAAGGACCGTCTGCCCTCCATAGTGGTGGAACCCACAGAA
GGGGAGGTGGAGAGCGGGGAGCTCCGGTGGCCCCCTGAGGAGTTCCTGGTCCAGGAGGATGAGCAAGATA
ACTGCGAAGAGACAGCGAAAGAAAATAAAGAGCAGTAG

Translation (105 aa):
MSIYFPIHCPDYLRSAKMTEVMMNTQPMEEIGLSPRKDGLSYQIFPDPSDFDRCCKLKDRLPSIVVEPTE
GEVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH