NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17467.1 Public Mus musculus 3 Tsacc 23 108 98 CCDS HistoryNCBI Gene:76927Re-query CCDS DB by CCDS ID:17467.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010682.3 ENSMUSP00000010682.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010682.3Link to Ensembl Protein Viewer:ENSMUSP00000010682.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000010682Re-query CCDS DB by Protein ID:ENSMUSP00000010682
Original member Current member EBI ENSMUST00000107556.9 ENSMUSP00000103180.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107556.9Link to Ensembl Protein Viewer:ENSMUSP00000103180.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107556Re-query CCDS DB by Protein ID:ENSMUSP00000103180
Original member Current member NCBI NM_001357024.1 NP_001343953.1 Accepted alive Link to Nucleotide Sequence:NM_001357024.1Link to Protein Sequence:NP_001343953.1Re-query CCDS DB by Nucleotide ID:NM_001357024Re-query CCDS DB by Protein ID:NP_001343953Link to BLAST:NP_001343953.1
Original member Current member NCBI NM_029801.3 NP_084077.1 Accepted alive Link to Nucleotide Sequence:NM_029801.3Link to Protein Sequence:NP_084077.1Re-query CCDS DB by Nucleotide ID:NM_029801Re-query CCDS DB by Protein ID:NP_084077Link to BLAST:NP_084077.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343953.1 124 Q9DA44 124 100% 0 0
NP_084077.1 124 Q9DA44 124 100% 0 0

Chromosomal Locations for CCDS 17467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88282767 88282984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88287098 88287217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88295391 88295427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (375 nt):
ATGGAGCAGCACACTAGTAACCCTACTAAGGAAAAAGCCAAAGAGGAAGATAGCGTTGCGTGTTTTTGTC
CAGCAAAATCCTCCCCCAGTTACATTGATCTTCCAGCAAATTTCACGCCAGCTAATTTCTTGACCATCCA
GACAAAGCTGTCTTCAGGAGCTGGTCAGAAGCCCAAGGGATGCCTCGGAGTCCTCGAGTGCATGTATGCC
AACCTCCAGCTCCAGACCCAGCTTGCTCAACGACAGATAGCTATTTTGGAAAACTTGCAGGCATCCCTCT
CACAGCCGGGTTCTGGGAGGGAGAGCAAGAACTGTTCTCTCCCTGGCTTATGTTGCAAACTGTTACTAAA
TCACCTGCCCCAATTCCATAAATGA

Translation (124 aa):
MEQHTSNPTKEKAKEEDSVACFCPAKSSPSYIDLPANFTPANFLTIQTKLSSGAGQKPKGCLGVLECMYA
NLQLQTQLAQRQIAILENLQASLSQPGSGRESKNCSLPGLCCKLLLNHLPQFHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH