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Report for CCDS16841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16841.1 Public Mus musculus 2 Gzf1 23 108 98 CCDS HistoryNCBI Gene:74533Re-query CCDS DB by CCDS ID:16841.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16841.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028928.7 ENSMUSP00000028928.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028928.7Link to Ensembl Protein Viewer:ENSMUSP00000028928.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028928Re-query CCDS DB by Protein ID:ENSMUSP00000028928
Original member Current member NCBI NM_001355689.1 NP_001342618.1 Accepted alive Link to Nucleotide Sequence:NM_001355689.1Link to Protein Sequence:NP_001342618.1Re-query CCDS DB by Nucleotide ID:NM_001355689Re-query CCDS DB by Protein ID:NP_001342618Link to BLAST:NP_001342618.1
Original member Current member NCBI NM_028986.3 NP_083262.1 Accepted alive Link to Nucleotide Sequence:NM_028986.3Link to Protein Sequence:NP_083262.1Re-query CCDS DB by Nucleotide ID:NM_028986Re-query CCDS DB by Protein ID:NP_083262Link to BLAST:NP_083262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342618.1 706 Q4VBD9 706 100% 0 0
NP_083262.1 706 Q4VBD9 706 100% 0 0

Chromosomal Locations for CCDS 16841.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 148683611 148684968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148686514 148686608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148688004 148688171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148690076 148690233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148690707 148691048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGGAAAGTGGCACAGTTTTGCTGGAATCCAAATCTTCACCACTCAACCTTCTGCATGAGATGCATGAGC
TCCGCCTTCTGGGCCACTTGTGTGATGTCACTGTTAGCATAGAGAACCAGGGTGTCCATGAAGACTTCAT
GGCCCATAAAGCAGTGCTGGCGGCCACCAGCAAGTTTTTTAAGGAGGTGTTCCTAAACGAGAAGAGTGCA
GATGGAACCAGGACTAATGTTTACTTGAATGAAGTTCAGGCTGTTGACTTTGCTTCGTTTCTGGAGTTTG
TCTATACTGCCAAAGTGCGGGTAGAAGAAGACCGTGTGCAGCAGATGCTCGAAGTGGCTGAGAAGCTAAA
GTGTTTGGACCTGTCTGAAACATGCTTGCAGCTAAAGAAGCAGATGCTGGAGTCTGTCCTTTTGGAATTG
CAGAATTTCTCTGAGTCTCAGGAGGTGGAGGCCAGCAGTGGCCCCCAGGTGAGTGTGACCCCCAGCTCCA
AAGCAAGTGTACCAGGGGAGGATGCTCACTCCAATGGCCTTGTAGATTCCTCCGACTACCCAATAGAGAG
ACTGGGCAATGGGCTCTCACCAGAAACACCATCCAAGAAGTGTAAGGAGAAACTGGACAAGAAGAAAGAT
GTGGCTAAGCCTCCCTTCCCTAAAATCAGAAGAGCAAGTGGGAGGCTGGCTGGAAAAAAGGTGTTTGTGG
AAATCCCCAAAAAGAAATATACAAGAAGGCTCCGAGAACAGCAGAAAAGTGCTGAGGAAGCCGCAGAGAA
TGACAAGTGTCCTCAGGACCAAAGCCCAGACAATGAGAGGATGGAGACTGAGCCAGCTGCCAAAAGTGAG
GCTTGCCCTGCTAGTGTAGAACTGGAGGAAAGCCTGCAGAAAGTGGAGGGGGAGAAGGAAGAGGAAGAAG
GAAAGGACGGGGAGGAGAAGAAGAAGAGTAACTTCCAGTGCACAGTCTGTGACAAGGCCTTCCTGTACGA
GAAGAGTTTCCTGAAACATATCAAGTACCACCATGGTGTGGCCACCGAAGTGGTGTACCGATGTGACACT
TGTGGCCAGACCTTTGCCAACCGCTGCAACCTGAAGAGCCACCAGCGCCACGTGCACAGCAGCGAGCGCC
ACTTCCCGTGTGAAATGTGTGCCAAGAAGTTCAAACGCAAGAAAGATGTGAAACGGCATGTGCTGCAGGT
GCATGAGGGTGGTGGCGAGCGGCACCGCTGTGGCCAGTGTGGCAAAGGCCTGAGCTCCAAGACTGCTCTG
CGGCTGCACGAGCGCACACACACAGGCGACAAGCCCTATGGCTGTACCAAGTGTGATGCCAAGTTCTCAC
AGCCATCAGCTCTTAAAACCCACCTGAGAGTTCATACAGGGGAAAGACCTTTTGTCTGTGATGAATGTGG
TGCAAGATTCACTCAGAACCACATGCTGATTTATCATAAAAGGTGCCACACAGGTGAAAGGCCTTTCATG
TGTGAGACATGTGGCAAGAGTTTTGCTTCTAAGGAGTACTTAAAGCATCATAACAGAATCCACACTGGAT
CGAAGCCCTTTAAATGTGAAGTGTGCTTGCGGACCTTTGCTCAGCGCAATTCCCTGTACCAGCATATTAA
AGTCCACACGGGAGAGCGGCCTTATTGTTGTGACCAGTGTGGGAAGCAGTTCACCCAGGTAAATGCCCTC
CAGCGCCACCATCGCATCCACACTGGGGAGAAGCCATACATGTGCAATGCATGTGGACGGACTTTTACTG
ACAAGTCTACTCTCCGGAGGCATACCTCAATACATGATAAGAATACGCCGTGGAAGTCTTTCCTTGTCAT
TGTAGATGGCTCACCCAAGAATGATGAAGGGCATAAGACAGAACAACCCGATGATGAATATGCATCACCC
AAACTTTCAGATCGATTACTATCTTTTGGTGAAAATAGCCATTTCAACAACTTACTGGAAGTCCAAGGCA
ATGTGCCTGCCGTGCAGGAGAACAGCTCTACAGGCGCTGCTTGCAAAGCAGTGGTGTCTCAGGACGCTCT
GCTTACCACTTCCATCAGTGCCCTTGGTGAGCTCACCCCACAGGCAGTTTCCATGCCTGCACACCTTCCC
TCCTTGACCAATATGGAGTGA

Translation (706 aa):
MESGTVLLESKSSPLNLLHEMHELRLLGHLCDVTVSIENQGVHEDFMAHKAVLAATSKFFKEVFLNEKSA
DGTRTNVYLNEVQAVDFASFLEFVYTAKVRVEEDRVQQMLEVAEKLKCLDLSETCLQLKKQMLESVLLEL
QNFSESQEVEASSGPQVSVTPSSKASVPGEDAHSNGLVDSSDYPIERLGNGLSPETPSKKCKEKLDKKKD
VAKPPFPKIRRASGRLAGKKVFVEIPKKKYTRRLREQQKSAEEAAENDKCPQDQSPDNERMETEPAAKSE
ACPASVELEESLQKVEGEKEEEEGKDGEEKKKSNFQCTVCDKAFLYEKSFLKHIKYHHGVATEVVYRCDT
CGQTFANRCNLKSHQRHVHSSERHFPCEMCAKKFKRKKDVKRHVLQVHEGGGERHRCGQCGKGLSSKTAL
RLHERTHTGDKPYGCTKCDAKFSQPSALKTHLRVHTGERPFVCDECGARFTQNHMLIYHKRCHTGERPFM
CETCGKSFASKEYLKHHNRIHTGSKPFKCEVCLRTFAQRNSLYQHIKVHTGERPYCCDQCGKQFTQVNAL
QRHHRIHTGEKPYMCNACGRTFTDKSTLRRHTSIHDKNTPWKSFLVIVDGSPKNDEGHKTEQPDDEYASP
KLSDRLLSFGENSHFNNLLEVQGNVPAVQENSSTGAACKAVVSQDALLTTSISALGELTPQAVSMPAHLP
SLTNME


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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