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Report for CCDS38120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38120.1 Public Mus musculus 2 Arpc5l 23 108 98 CCDS HistoryNCBI Gene:74192Re-query CCDS DB by CCDS ID:38120.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38120.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112862.6 ENSMUSP00000108483.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112862.6Link to Ensembl Protein Viewer:ENSMUSP00000108483.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112862Re-query CCDS DB by Protein ID:ENSMUSP00000108483
Original member NCBI NM_028809.1 NP_083085.1 Updated not alive Link to Nucleotide Sequence:NM_028809.1Link to Protein Sequence:NP_083085.1Re-query CCDS DB by Nucleotide ID:NM_028809Re-query CCDS DB by Protein ID:NP_083085
Current member NCBI NM_028809.2 NP_083085.1 Accepted alive Link to Nucleotide Sequence:NM_028809.2Link to Protein Sequence:NP_083085.1Re-query CCDS DB by Nucleotide ID:NM_028809Re-query CCDS DB by Protein ID:NP_083085Link to BLAST:NP_083085.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083085.1 153 Q9D898 153 100% 0 0

Chromosomal Locations for CCDS 38120.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 39008196 39008344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39013115 39013187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39013723 39013899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39015058 39015120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGCCCGGAACACACTGTCCTCACGCTTCCGCCGCGTGGATATCGACGAATTTGACGAGAACAAATTCG
TAGACGAGCACGAAGAGGCAGCGGCGGCGGCGGGCGAGCCAGGCCCCGACCCCTGCGAGGTAGACGGGCT
CCTGCGGCAAGGGGACATGCTTCGGGCGTTCCATGCAGCTTTGCGGAACTCACCAATCAACACCAAGAAT
CAAGCTGTGAAGGAACGAGCCCAGGGTGTAGTCCTGAAAGTACTCACAAACTTTAAGAGCAGCGAAATTG
AGCAGGCTGTGCAGTCACTGGACAGAAATGGCATTGATTTGCTAATGAAGTACATTTATAAAGGGTTTGA
GAAGCCTACAGAAAATAGCAGTGCAGTGCTACTCCAGTGGCATGAAAAGGCCTTAGCTGTAGGAGGACTA
GGCTCCATTATAAGAGTTCTTACAGCAAGAAAGACTGTTTAA

Translation (153 aa):
MARNTLSSRFRRVDIDEFDENKFVDEHEEAAAAAGEPGPDPCEVDGLLRQGDMLRAFHAALRNSPINTKN
QAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGL
GSIIRVLTARKTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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