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Report for CCDS18773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18773.1 Public Mus musculus 4 Paqr7 23 108 98 CCDS HistoryNCBI Gene:71904Re-query CCDS DB by CCDS ID:18773.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081525.3 ENSMUSP00000080240.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081525.3Link to Ensembl Protein Viewer:ENSMUSP00000080240.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000081525Re-query CCDS DB by Protein ID:ENSMUSP00000080240
Original member Current member EBI ENSMUST00000095074.3 ENSMUSP00000125932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095074.3Link to Ensembl Protein Viewer:ENSMUSP00000125932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095074Re-query CCDS DB by Protein ID:ENSMUSP00000125932
Original member NCBI NM_001285845.1 NP_001272774.1 Updated not alive Link to Nucleotide Sequence:NM_001285845.1Link to Protein Sequence:NP_001272774.1Re-query CCDS DB by Nucleotide ID:NM_001285845Re-query CCDS DB by Protein ID:NP_001272774
Current member NCBI NM_001285845.2 NP_001272774.1 Accepted alive Link to Nucleotide Sequence:NM_001285845.2Link to Protein Sequence:NP_001272774.1Re-query CCDS DB by Nucleotide ID:NM_001285845Re-query CCDS DB by Protein ID:NP_001272774Link to BLAST:NP_001272774.1
Original member NCBI NM_001285846.1 NP_001272775.1 Updated not alive Link to Nucleotide Sequence:NM_001285846.1Link to Protein Sequence:NP_001272775.1Re-query CCDS DB by Nucleotide ID:NM_001285846Re-query CCDS DB by Protein ID:NP_001272775
Current member NCBI NM_001285846.2 NP_001272775.1 Accepted alive Link to Nucleotide Sequence:NM_001285846.2Link to Protein Sequence:NP_001272775.1Re-query CCDS DB by Nucleotide ID:NM_001285846Re-query CCDS DB by Protein ID:NP_001272775Link to BLAST:NP_001272775.1
Original member NCBI NM_001285847.1 NP_001272776.1 Updated not alive Link to Nucleotide Sequence:NM_001285847.1Link to Protein Sequence:NP_001272776.1Re-query CCDS DB by Nucleotide ID:NM_001285847Re-query CCDS DB by Protein ID:NP_001272776
Current member NCBI NM_001285847.2 NP_001272776.1 Accepted alive Link to Nucleotide Sequence:NM_001285847.2Link to Protein Sequence:NP_001272776.1Re-query CCDS DB by Nucleotide ID:NM_001285847Re-query CCDS DB by Protein ID:NP_001272776Link to BLAST:NP_001272776.1
Original member NCBI NM_001285849.1 NP_001272778.1 Updated not alive Link to Nucleotide Sequence:NM_001285849.1Link to Protein Sequence:NP_001272778.1Re-query CCDS DB by Nucleotide ID:NM_001285849Re-query CCDS DB by Protein ID:NP_001272778
Current member NCBI NM_001285849.2 NP_001272778.1 Accepted alive Link to Nucleotide Sequence:NM_001285849.2Link to Protein Sequence:NP_001272778.1Re-query CCDS DB by Nucleotide ID:NM_001285849Re-query CCDS DB by Protein ID:NP_001272778Link to BLAST:NP_001272778.1
Original member NCBI NM_027995.3 NP_082271.1 Updated not alive Link to Nucleotide Sequence:NM_027995.3Link to Protein Sequence:NP_082271.1Re-query CCDS DB by Nucleotide ID:NM_027995Re-query CCDS DB by Protein ID:NP_082271
Current member NCBI NM_027995.4 NP_082271.1 Accepted alive Link to Nucleotide Sequence:NM_027995.4Link to Protein Sequence:NP_082271.1Re-query CCDS DB by Nucleotide ID:NM_027995Re-query CCDS DB by Protein ID:NP_082271Link to BLAST:NP_082271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272774.1 345 Q80ZE4 345 100% 0 0
NP_001272775.1 345 Q80ZE4 345 100% 0 0
NP_001272776.1 345 Q80ZE4 345 100% 0 0
NP_001272778.1 345 Q80ZE4 345 100% 0 0
NP_082271.1 345 Q80ZE4 345 100% 0 0

Chromosomal Locations for CCDS 18773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134506834 134507871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGGCGATGGCAGTAGCCCAGAAGTTCAACCACCTTCTGTCCAGCCTGTGGCACGTGGGCCAGAAGCCTC
CGCAACCAGAACCTGTGTTTACAGTGGACCGGGCCCAGGTGCCGCCACTTTTCTGGAAGCCGTACATCTA
TGCTGGCTACCGGCCGCTGCATCAGAACTGGTGTTTCTACTTCCGCACACTGTTTCAGCGGCACAACGAG
GCTGTGAACGTGTGGACCCACCTCCTGGCGGCCCTGGCTCTGCTGCTGCGGCTGATCGGCTTGGCGGCAA
GTGTGGACTTCCGGGAAGACCCTCACGCGCTGCCCCTCTTCTTCATCGTCTTGGCCTCCTTCACCTACCT
CTCGTTCAGTGCTGTGGCTCACCTCCTGCAGGCCAAGTCGGAGTTCTGGCATTACAGCTTCTTCTTCTTG
GACTATGTGGGTGTGGCCGTGTACCAGTTTGGCAGTGCCCTGGCACACTTCTACTATGCCATAGAGCCGT
CCTGGCATGACAAGGTGCAGGCTATTTTCCTGCCCACGGCCGCCTTCCTGGCCTGGCTTTCCTGCGCTGG
CTCCTGCTACAACAAGTACAGCCAGAAGCCGGGTCTGCTGGGGCGCATTTTCCAGGAGGCGCCATCGGCG
CTGGCCTATGTGCTGGACATCAGTCCCGTGTTGCACCGCATCATAGTGTCTCCCCTCCCTGCCGAGGAGG
ATCCCGCTCTTCTCTATCACAAATGCCAAGTGGTTTTCTTCCTTCTAGCTGCTGCCTTTTTCTCCACGGT
TATGCCTGAGAGTTGGTTCCCCGGCAGCTGTCACATCTTTGGGCAGGGACACCAAGTTTTCCATGTCTTT
TTGGTGCTGTGCACTCTGGCCCAGCTAGAGGCGGTGACACTGGATTATCAGGCCCGGAGGGGCATATACG
AGCCTCTGCACGCCCGTTGGCCCCACAACTTCTCTGGCCTCTTCCTGCTCACCGTGGCCAGCAGCAGCCT
CACTGCGCTCCTCCTCAGCCAGCTGGTGCGGCGCAAACTCCATCAGAAGACCAAGTGA

Translation (345 aa):
MAMAVAQKFNHLLSSLWHVGQKPPQPEPVFTVDRAQVPPLFWKPYIYAGYRPLHQNWCFYFRTLFQRHNE
AVNVWTHLLAALALLLRLIGLAASVDFREDPHALPLFFIVLASFTYLSFSAVAHLLQAKSEFWHYSFFFL
DYVGVAVYQFGSALAHFYYAIEPSWHDKVQAIFLPTAAFLAWLSCAGSCYNKYSQKPGLLGRIFQEAPSA
LAYVLDISPVLHRIIVSPLPAEEDPALLYHKCQVVFFLLAAAFFSTVMPESWFPGSCHIFGQGHQVFHVF
LVLCTLAQLEAVTLDYQARRGIYEPLHARWPHNFSGLFLLTVASSSLTALLLSQLVRRKLHQKTK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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