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Report for CCDS48546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48546.1 Public Mus musculus 10 Cdc40 23 108 98 CCDS HistoryNCBI Gene:71713Re-query CCDS DB by CCDS ID:48546.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044166.8 ENSMUSP00000044305.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044166.8Link to Ensembl Protein Viewer:ENSMUSP00000044305.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044166Re-query CCDS DB by Protein ID:ENSMUSP00000044305
Original member Current member NCBI NM_027879.2 NP_082155.1 Accepted alive Link to Nucleotide Sequence:NM_027879.2Link to Protein Sequence:NP_082155.1Re-query CCDS DB by Nucleotide ID:NM_027879Re-query CCDS DB by Protein ID:NP_082155Link to BLAST:NP_082155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082155.1 579 Q9DC48 579 100% 0 0

Chromosomal Locations for CCDS 48546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 40833179 40833356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40834176 40834320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40836288 40836364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40841354 40841487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40841700 40841815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40843042 40843143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40844961 40845006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40847130 40847204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40847924 40848063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40849745 40849841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40850930 40851069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40852497 40852580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40857547 40857676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40867824 40867910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40882887 40883075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGTCGGCTGCGATTGCAGCTCTAGCTGCTTCGTATGGCTCGGGCTCGGGGTCCGAATCGGATTCGGACA
GTGAGGGCAGTCGGTGTCCGCTGCCAGCCGCGGACTCTCTCATGCACTTGACCAAATCGCCTTCAGCCAA
GCTCTCTCTGACCGTGGCGGTGGACTCGGCTCCGGAGGTGGCAGTTAAGGAAGATCTGGAGACTGGAGTT
CACCTTGACCCTGCTGTCAAAGAAGTTCAGTATAATCCCACCTATGAGACCATGTTCGCTCCTGAGTTTG
GACCAGAAAATCCCTTTCGAACACAGCAAATGGCTGCCCCTAGAAATATGCTTTCTGGGTATGCAGAGCC
AGCACACATCAATGACTTCATGTTTGAACAGCAAAGAAGGACATTTGCTACGTACGGCTATGCACTGGAC
CCTTCGTTAGATAATCATCAGGTGTCTGCTAAGTATATTGGCTCTGTGGAAGAAGCGGAGAAGAACCAAG
GCTTAACTGTATTTGAAACTGGTCAGAAGAAAACAGAAAAGAGGAAAAAGTTCAAAGAAAATGATGCATC
TAATATTGATGGTTTCTTGGGACCATGGGCAAAATATGTGGATGAAAAAGATGTGGCCAAACCTTCAGAA
GAAGAACAAAAGGAATTGGATGAAATCACAGCAAAGAGGCAGAAAAAAGGCAAACAGGAAGAAGAGAAAC
CTGGGGAGGAGAAGACAATCTTACATGTTAAAGAAATGTATGACTATCAAGGCAGGTCCTACCTTCACAT
ACCTCAGGATGTTGGTGTTAATCTACGGTCATCTGTGCCACCTGAAAAATGTTACCTTCCCAAAAAACAA
ATTCACGTGTGGTCTGGACACACAAAGGGTGTCAGCGCCGTCAGGCTCTTTCCTCTTTCTGGACATTTGT
TGCTGTCTTGCTCCATGGACTGTAAAATTAAGCTATGGGAAGTTTATGGAGACCGGCGCTGTCTGAGAAC
ATTTATTGGTCACAGTAAAGCTGTGAGAGACATCTGCTTCAACACTGCAGGAACCCAGTTCCTCAGTGCG
GCCTACGACAGGTACCTTAAACTCTGGGACACCGAGACAGGACAGTGTATATCAAGATTTACAAACCGCA
AAGTACCCTACTGCGTCAAGTTCAATCCCGATGAAGATAAGCAAAATCTCTTTGTGGCTGGGATGTCTGA
TAAGAAGATCGTACAGTGGGACATCCGCAGTGGAGAGATTGTTCAGGAATATGATCGGCATCTGGGGGCT
GTCAACACGATTGTTTTTGTTGATGAGAACCGAAGATTCGTGAGTACATCTGATGATAAAAGCCTACGAG
TTTGGGAATGGGATATCCCTGTGGATTTTAAGTACATAGCAGAGCCCAGCATGCACTCAATGCCCGCAGT
GACTTTGTCTCCAAATGGGAAATGGCTAGCATGCCAGTCAATGGACAACCAAATCTTAATTTTTGGAGCA
CAGAACAGATTCAGATTGAATAAGAAGAAAATATTTAAGGGCCACATGGTAGCAGGCTACGCTTGTCAGG
TAGACTTCTCACCAGACATGAGCTATGTGATTTCAGGAGATGGAAATGGGAAATTAAACATCTGGGACTG
GAAGACCACAAAACTCTACAGTCGCTTTAAAGCCCATGATAAAGTGTGCATAGGCGCAGTGTGGCACCCC
CATGAGACCTCCAAGGTCATCACGTGTGGTTGGGACGGCCTCATTAAGTTGTGGGATTAA

Translation (579 aa):
MSAAIAALAASYGSGSGSESDSDSEGSRCPLPAADSLMHLTKSPSAKLSLTVAVDSAPEVAVKEDLETGV
HLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHINDFMFEQQRRTFATYGYALD
PSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSE
EEQKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSSVPPEKCYLPKKQ
IHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSA
AYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGA
QNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHP
HETSKVITCGWDGLIKLWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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