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Report for CCDS25198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25198.1 Public Mus musculus 11 Ints2 23 108 98 CCDS HistoryNCBI Gene:70422Re-query CCDS DB by CCDS ID:25198.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25198.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018212.12 ENSMUSP00000018212.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018212.12Link to Ensembl Protein Viewer:ENSMUSP00000018212.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018212Re-query CCDS DB by Protein ID:ENSMUSP00000018212
Original member Current member EBI ENSMUST00000108039.7 ENSMUSP00000103674.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108039.7Link to Ensembl Protein Viewer:ENSMUSP00000103674.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108039Re-query CCDS DB by Protein ID:ENSMUSP00000103674
Original member Current member NCBI NM_001363129.1 NP_001350058.1 Accepted alive Link to Nucleotide Sequence:NM_001363129.1Link to Protein Sequence:NP_001350058.1Re-query CCDS DB by Nucleotide ID:NM_001363129Re-query CCDS DB by Protein ID:NP_001350058Link to BLAST:NP_001350058.1
Original member Current member NCBI NM_027421.3 NP_081697.2 Accepted alive Link to Nucleotide Sequence:NM_027421.3Link to Protein Sequence:NP_081697.2Re-query CCDS DB by Nucleotide ID:NM_027421Re-query CCDS DB by Protein ID:NP_081697Link to BLAST:NP_081697.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350058.1 1198 Q80UK8-1 1198 100% 0 0
NP_081697.2 1198 Q80UK8-1 1198 100% 0 0

Chromosomal Locations for CCDS 25198.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 86212632 86212801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86212891 86213067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86214911 86215016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86215144 86215251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86215547 86215798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86217736 86217934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86222106 86222231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86224943 86225144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86226638 86226802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86229201 86229305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86231965 86232073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86233083 86233259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86234672 86234806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86236539 86236607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86238259 86238373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86238465 86238536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86242913 86243038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86244403 86244629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86248810 86248983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86249222 86249352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86250968 86251081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86252258 86252360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86255346 86255484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86256023 86256318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3597 nt):
ATGACGCCCGAGGGTACAGGCCTGCAGTTTGTCAGCCCTTTTGCTTTTGAAGCTATGCAGAAGGTGGATG
TTGTCCGCCTGGCGTCCTTAAGTGATCCGGAATTAAGACTCCTCTTGCCCTGCCTGGTGAGGATGGCACT
TTGTGCTCCTGCTGACCAGAGCCAAAGTTGGGCACAGGATAAGAAACTTATACTTCGCCTCCTGTCTGGA
GTGGAAGCTGTCAACTCCATTGTTGCACTGTTGTCTGTGGACTTCCACGCTCTAGAACAAGATGCCAGCA
AAGAACAGCAGCTTAGGCATAAACTTGGAGGAGGCAGTGGAGAGAGCATCCTGGTATCACAGCTTCAGCA
TGGGCTGACACTAGAGTTTGAACACAGTGATTCCCCTCGTCGATTGCGGCTTGTGCTGAGTGAATTGTTG
GCAATTATGAACAAGGTGTCAGAGTGCAATGGAGAGTTCTTTTTCAAGTCTTCTGAGCTCTTTGAGAGTG
CAGTGTACTTGGAGGAAGCTGCAGATGTCCTTTGTATCTTACAAGCAGAGCTCCCTTCCCTGCTTCCTAT
AGTGGACGTCGCGGAAGCCTTGCTGCGTGTTAGAAATGGAGCCTGGTTCTTGTGTCTCCTGGTAGCCAAT
GTTCCTGATAGTTTTAACGAAGTTTGTAGGGGCCTGATCAAAAACGGAGAACGGCAGGATGAAGAAAGTC
TCGGAGGGAGGCGCAGGACAGACGCCCTACGCTTCCTATGCAGAATGAATCCTTCTCAGGCCCTGAAGGT
CCGGGGCATGGTGGTGGAAGAATGTCACTTGCCAGGCCTTGGAGTAGCTTTGACATTGGATCATACTAAA
ACCGAAGCTTGTGAGGATGGAGTGAGCGACTTGGTTTGCTTTGTTAGTGGTTTGCTTCTTGGAACAAATG
CAAAAGTCAGGACTTGGTTTGGAACCTTCATTCGAAATGGACAACAGAGAAAACGGGAGACCAGTGGTTC
CGTGCTTTGGCAGATGAGAAGGCAGCTGCTTCTGGAGTTGATGGGCATTCTTCCTACAGTGAGGAGTACC
CGTATTGTGGAGGAAGCCGATGTGGAGATGGAACCTACCGTGTCGGTGTACTCGGGGCTGAAGGAAGAGC
ACGTCGTGAAAGCCAGTGCACTCTTACGTCTGTACTGTGCCTTGATGGGAATTGCTGGACTCAAACCAAC
TGAAGAAGAAGCTGAGCAGTTGCTGCAGCTGATGACCAGCCGACCTCCTGCCACGCCGGCCGGGGTTCGC
TTTGTTTCCCTCTCCTTCTGTATGCTGCTGGCCTTCTCCACACTCGTCAGCACGCCGGAGCAGGAGCAGC
TGATGGTGCTGTGGCTCAGCTGGATGATCAAGGAAGAGGCGTACTTTGAGAGTACATCAGGTGTCTCTGC
TTCTTTTGGGGAGATGTTGCTATTGGTGGCCATGTATTTCCATAGCAACCAGCTTAGTGCTATCATTGAC
TTAGTCTGCTCCACTTTGGGGATGAAGATTGTGATTAAGCCAAGCTCCTTAAGCAGGATGAAGACCATCT
TCACACAGGAGATCTTTACAGAGCAGGTTGTCACAGCCCATGCAGTTCGAGTTCCTGTCACCAGCAACTT
GAGTGCCAACATTACTGGGTTTTTGCCCATTCATTGTATTTACCAACTTCTCAGGAGTCGATCGTTTACC
AAGCACAAAGTGTCAATAAAAGACTGGATTTACAGACAGCTATGTGAAACTTCCACTCCACTCCACCCTC
AGCTCCTTCCTCTGATTGATGTGTACATAAACTCCATACTCACTCCTGCGTCTAAGTCTAACCCTGAAGC
CACGAACCAGCCGGTCACTGAGCAGGAGATCCTGAACCTTTTCCAGGAGGTCATCGGGGGAGACAGCGTC
CGCCTTACCCAGCGCTTCAGTATCACAGCGCAGCTTCTGGTGCTCTACTATATCCTGTCTTACGAGGAAG
CTCTCCTGGCGAACACAAAGACGCTAGCTTCCATGCAGAGGAAACCCAAATCATATTCTTCTTCTTTAAT
GGACCAAATTCCTATCAAGTTTCTTATTCGGCAGGCTCAAGGACTGCAGCAGGAGTTGGGAGGGCTGCAT
TCAGCTTTACTACGTCTTCTAGCAACTAATTATCCACATCTGTGTATTGTGGATGACTGGATCTGTGAGG
AGGAGATCACAGGGACTGATGCGCTGTTAAGGCGAATGCTCCTGACAAGTAATGCCAAAACCCACTCTCC
GAAACAGCTGCAGGAAGCATTTTCAGCTGTCCCTGTAAGTCACACACAAGTGATGCAGATTATGGAACAC
TTGACTCTACTTTCTGCCAGTGAACTTATTCCATATGCAGAAGTACTAACGTCCAATATGAACCAGCTGC
TGAATTCTGGGGTTCCACGGAGAATTCTTCAAACTGTCAACAAGTTATGGATGGTTCTTAATACTGTGAT
GCCAAGAAGGCTGTGGGTAATGACGGTTAATGCACTCCAACCTTCCATAAAGTTTATACGACAACAAAAA
TATACCCAGAATGATTTGATGATAGATCCTCTCATTGTCTTGAGGTGTGACCGACGGGTTCACAGGTGTC
CCCCACTAATGGATGTTACTTTACACATGCTCAATGGGTACCTCCTTGCCTCTAAAGCTTACCTTAGTGC
CCATCTAAAGGAAACGGCAGAGCAAGATAGACCTTCCCCGAATAATACAGTAGGCTTGGTTGGACAGACT
GATGCCCCAGAAGTGACCAGAGAAGAACTGAAAAACGCATTACTGGCTGCTCAGGACAGTGCTGCTGTCC
AGATTCTCTTAGAAATTTGCTTGCCGACTGAAGAGGAAAAGGCAAAAGGTGCCAATTCAGACATCTCCCT
CAGGAATACTCAAGGTGTCACCACCATCAGCACTCCAAGTAAAGAAACAGAAGAAGGAGAAGACAATTTG
CTCTGTAACCTTCGGGAAGTTCAGTGCCTTATCTGTTGCCTGTTACACCAAATGTACATTGCAGATCCCA
ACATTGCTAAACTTGTTCACTTTCAGGGTTATCCATGTGAACTTCTGCCTCTGACAGTCGCAGGGATCCC
GTCTATGCACATCTGTTTGGATTTCATACCGGAGCTTATTGCCCAGCCAGAACTTGAAAAACAGATATTT
GCTATACAGCTGCTTTCTCACTTGTGTATCCAGTATGCATTACCAAAGTCACTTAGTGTGGCTCGCTTAG
CTGTCAATGTTATGGGGACTTTGCTAACAGTTCTGACACAAGCTAAGCGGTACTCGTTTTTCATGCCAAC
TCTTCCAAGTTTGGTCTCCTTTTGTCGAGCATTTCCTCCACTGTATGAGGATATTATGTCTTTGCTAATT
CAAATAGGACAAGTGTGTGCCTCTGATGTTGCCACTCAGACAAGAGACATTGATCCAATCATTACACGTC
TTCAACAAATAAAGGAGAAACCTAGTGGATGGTCTCAAATTTGTAAGGATCCATCTTACAAAAATGGATC
CAGGGACACTGGAAGCATGGATCCTGATGTCCAGCTCTGTCATTGTATTGAAAGCACAATAATTGAAATA
ATAAACATGAGTGTTAGTGGAATTTAA

Translation (1198 aa):
MTPEGTGLQFVSPFAFEAMQKVDVVRLASLSDPELRLLLPCLVRMALCAPADQSQSWAQDKKLILRLLSG
VEAVNSIVALLSVDFHALEQDASKEQQLRHKLGGGSGESILVSQLQHGLTLEFEHSDSPRRLRLVLSELL
AIMNKVSECNGEFFFKSSELFESAVYLEEAADVLCILQAELPSLLPIVDVAEALLRVRNGAWFLCLLVAN
VPDSFNEVCRGLIKNGERQDEESLGGRRRTDALRFLCRMNPSQALKVRGMVVEECHLPGLGVALTLDHTK
TEACEDGVSDLVCFVSGLLLGTNAKVRTWFGTFIRNGQQRKRETSGSVLWQMRRQLLLELMGILPTVRST
RIVEEADVEMEPTVSVYSGLKEEHVVKASALLRLYCALMGIAGLKPTEEEAEQLLQLMTSRPPATPAGVR
FVSLSFCMLLAFSTLVSTPEQEQLMVLWLSWMIKEEAYFESTSGVSASFGEMLLLVAMYFHSNQLSAIID
LVCSTLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPVTSNLSANITGFLPIHCIYQLLRSRSFT
KHKVSIKDWIYRQLCETSTPLHPQLLPLIDVYINSILTPASKSNPEATNQPVTEQEILNLFQEVIGGDSV
RLTQRFSITAQLLVLYYILSYEEALLANTKTLASMQRKPKSYSSSLMDQIPIKFLIRQAQGLQQELGGLH
SALLRLLATNYPHLCIVDDWICEEEITGTDALLRRMLLTSNAKTHSPKQLQEAFSAVPVSHTQVMQIMEH
LTLLSASELIPYAEVLTSNMNQLLNSGVPRRILQTVNKLWMVLNTVMPRRLWVMTVNALQPSIKFIRQQK
YTQNDLMIDPLIVLRCDRRVHRCPPLMDVTLHMLNGYLLASKAYLSAHLKETAEQDRPSPNNTVGLVGQT
DAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKAKGANSDISLRNTQGVTTISTPSKETEEGEDNL
LCNLREVQCLICCLLHQMYIADPNIAKLVHFQGYPCELLPLTVAGIPSMHICLDFIPELIAQPELEKQIF
AIQLLSHLCIQYALPKSLSVARLAVNVMGTLLTVLTQAKRYSFFMPTLPSLVSFCRAFPPLYEDIMSLLI
QIGQVCASDVATQTRDIDPIITRLQQIKEKPSGWSQICKDPSYKNGSRDTGSMDPDVQLCHCIESTIIEI
INMSVSGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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