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Report for CCDS27779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27779.1 Public Mus musculus 15 Slc38a4 23 108 98 CCDS HistoryNCBI Gene:69354Re-query CCDS DB by CCDS ID:27779.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023101.9 ENSMUSP00000023101.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023101.9Link to Ensembl Protein Viewer:ENSMUSP00000023101.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023101Re-query CCDS DB by Protein ID:ENSMUSP00000023101
Original member Current member EBI ENSMUST00000166223.1 ENSMUSP00000127676.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166223.1Link to Ensembl Protein Viewer:ENSMUSP00000127676.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166223Re-query CCDS DB by Protein ID:ENSMUSP00000127676
Original member Current member EBI ENSMUST00000230086.1 ENSMUSP00000154818.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230086.1Link to Ensembl Protein Viewer:ENSMUSP00000154818.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230086Re-query CCDS DB by Protein ID:ENSMUSP00000154818
Original member Current member EBI ENSMUST00000231039.1 ENSMUSP00000155158.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231039.1Link to Ensembl Protein Viewer:ENSMUSP00000155158.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231039Re-query CCDS DB by Protein ID:ENSMUSP00000155158
Original member Current member NCBI NM_001358058.1 NP_001344987.1 Accepted alive Link to Nucleotide Sequence:NM_001358058.1Link to Protein Sequence:NP_001344987.1Re-query CCDS DB by Nucleotide ID:NM_001358058Re-query CCDS DB by Protein ID:NP_001344987Link to BLAST:NP_001344987.1
Original member Current member NCBI NM_001358059.1 NP_001344988.1 Accepted alive Link to Nucleotide Sequence:NM_001358059.1Link to Protein Sequence:NP_001344988.1Re-query CCDS DB by Nucleotide ID:NM_001358059Re-query CCDS DB by Protein ID:NP_001344988Link to BLAST:NP_001344988.1
Original member Current member NCBI NM_001358060.1 NP_001344989.1 Accepted alive Link to Nucleotide Sequence:NM_001358060.1Link to Protein Sequence:NP_001344989.1Re-query CCDS DB by Nucleotide ID:NM_001358060Re-query CCDS DB by Protein ID:NP_001344989Link to BLAST:NP_001344989.1
Original member Current member NCBI NM_027052.3 NP_081328.2 Accepted alive Link to Nucleotide Sequence:NM_027052.3Link to Protein Sequence:NP_081328.2Re-query CCDS DB by Nucleotide ID:NM_027052Re-query CCDS DB by Protein ID:NP_081328Link to BLAST:NP_081328.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344987.1 547 Q8R1S9 547 100% 0 0
NP_001344988.1 547 Q8R1S9 547 100% 0 0
NP_001344989.1 547 Q8R1S9 547 100% 0 0
NP_081328.2 547 Q8R1S9 547 100% 0 0

Chromosomal Locations for CCDS 27779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 96996990 96997091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96998443 96998540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96999489 96999633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97005820 97005944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97008413 97008513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97008658 97008737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97008863 97009138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97009947 97010005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97010115 97010197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97010284 97010365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97012900 97012992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97013438 97013511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97016128 97016243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97016761 97016851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97019724 97019842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGGACCCCATGGAACTGAACAACGTCAGCATCGAACCCGACGGAGACAGCTGCAGCGGGGACAGTATTC
AGGACAGCTACACCGGCATGGAAAACTCCGACAAGGACGCCATGAACAGCCAATTTGCTAATGAAGATGC
CGAAAGTCAGAAGTTCCTGACAAATGGGTTTTTAGGGAAGAAGAAGCTAGCCGATTACGCGGATGAGCAT
CACCCTGGAATGACTTCCTTTGGAATGTCCTCATTTAACCTGAGCAACGCCATCATGGGCAGTGGGATCT
TAGGCTTGTCCTATGCCATGGCCAACACCGGGATCATCCTTTTTATAATCATGCTGCTTACTGTGGCAAT
ACTCTCGCTCTACTCGGTTCACCTTTTGCTGAAGACAGCCAAGGAAGGAGGGTCTCTAATCTATGAAAAA
TTGGGCGAGAAAGCATTTGGATGGCCTGGGAAAATTGGAGCCTTCATCTCTATTACAATGCAGAACATTG
GAGCCATGTCAAGCTACCTCTTCATCATTAAGTACGAACTGCCTGAAGTAATCAGAGCATTCATGGGACT
TGAAGAAAACACTGGGGAATGGTACCTCAACGGCAACTACCTCGTCTTATTTGTGTCCGTGGGGATCATC
CTCCCGCTCTCTCTCCTTAAAAATTTAGGCTACCTTGGCTACACCAGTGGATTTTCTCTCTCCTGCATGG
TGTTTTTCGTCAGTGTGGTGATTTACAAAAAATTCCAAATTCCCTGCCCTCTGCCTGCTCTGGATCACAA
CAACGGAAATCTGACGTTCAACAACACACTTCCGATTCACATGATCTCGCTGCCTAATGACTCGGAGAGC
TCGGGTGTGAACTTCATGATGGATTACGCTCACCACAACCCAGCTGGGCTGGATGAGAAGCAGGTCGCAG
GCCCTCTTCACAGCAATGGCGTGGAGTACGAAGCCCAGGGTGCTGAGAAATGCCAACCAAAATACTTTGT
GTTCAATTCCCGGACGGCCTATGCAATCCCAATCCTGGCTTTTGCTTTTGTCTGCCACCCTGAGGTCCTT
CCCATCTACAGCGAGCTTAAAGATCGATCCCGCAGAAAGATGCAGACGGTGTCCAACATTTCCATCTCAG
GCATGCTCGTCATGTACCTTCTTGCGGCCCTCTTTGGTTATCTGAGCTTCTACGGGGACGTTGAAGACGA
GCTGCTGCATGCTTACAGCAAGGTCTACACATTTGATACGGCTCTTCTCATGGTGCGCCTGGCAGTCCTG
GTGGCAGTGACACTGACCGTGCCCATCGTGCTGTTCCCGATCCGTACTTCGGTGATCACACTGCTGTTTC
CAAGGAAACCCTTCAGCTGGCTGAAGCATTTCGGGATCGCTGCAATCATCATCGCACTCAACAACATCCT
GGTCATCCTCGTGCCTACCATCAAATACATCTTTGGATTCATAGGGGCTTCTTCTGCCACTATGCTGATT
TTCATTCTTCCGGCTGCGTTTTATCTCAAGCTCGTCAAGAAAGAACCTCTAAGATCACCCCAGAAGATTG
GGGCTTTGGTCTTCCTTGTGACTGGAATTATTTTCATGATGGGAAGCATGGCGCTCATTATACTCGACTG
GATCTACAACCCGCCGAATCCCAATCACCACTAA

Translation (547 aa):
MDPMELNNVSIEPDGDSCSGDSIQDSYTGMENSDKDAMNSQFANEDAESQKFLTNGFLGKKKLADYADEH
HPGMTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLTVAILSLYSVHLLLKTAKEGGSLIYEK
LGEKAFGWPGKIGAFISITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTGEWYLNGNYLVLFVSVGII
LPLSLLKNLGYLGYTSGFSLSCMVFFVSVVIYKKFQIPCPLPALDHNNGNLTFNNTLPIHMISLPNDSES
SGVNFMMDYAHHNPAGLDEKQVAGPLHSNGVEYEAQGAEKCQPKYFVFNSRTAYAIPILAFAFVCHPEVL
PIYSELKDRSRRKMQTVSNISISGMLVMYLLAALFGYLSFYGDVEDELLHAYSKVYTFDTALLMVRLAVL
VAVTLTVPIVLFPIRTSVITLLFPRKPFSWLKHFGIAAIIIALNNILVILVPTIKYIFGFIGASSATMLI
FILPAAFYLKLVKKEPLRSPQKIGALVFLVTGIIFMMGSMALIILDWIYNPPNPNHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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