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Report for CCDS51733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51733.1 Public Mus musculus 6 Rbm28 23 108 98 CCDS HistoryNCBI Gene:68272Re-query CCDS DB by CCDS ID:51733.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007993.15 ENSMUSP00000007993.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007993.15Link to Ensembl Protein Viewer:ENSMUSP00000007993.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000007993Re-query CCDS DB by Protein ID:ENSMUSP00000007993
Original member Current member NCBI NM_133925.2 NP_598686.2 Accepted alive Link to Nucleotide Sequence:NM_133925.2Link to Protein Sequence:NP_598686.2Re-query CCDS DB by Nucleotide ID:NM_133925Re-query CCDS DB by Protein ID:NP_598686Link to BLAST:NP_598686.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598686.2 750 Q8CGC6 750 100% 0 0

Chromosomal Locations for CCDS 51733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29125390 29125524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29127798 29127900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29128429 29128685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29131267 29131341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29131627 29131776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29135408 29135566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29137579 29137643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29138503 29138638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29139553 29139626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29143554 29143663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29152282 29152354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29154754 29154893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29155027 29155189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29157068 29157139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29158170 29158262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29158847 29158922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29159656 29159750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29160037 29160195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29164491 29164608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2253 nt):
ATGGCCGGTCTGACTTTATTCGTGGGCCGTCTCCCGCCCTCGGCTCGCAGCGATCAGCTGGAAGAGCTGT
TCAGTCAGGTGGGTCCGGTGAAGCAGTGCTTCGTGGTGACAGAGAAAGGGAGTAAGGCATGCCGAGGCTT
TGGCTACGTGACTTTCTCCATGCTGGAAGATGTTCAGAGGGCCCTCAAGGAGATCACTACCTTTGAAGGT
TGTAAGATCGATGTGACTGTTGCCAAGAAAAAACTGAGGAACAAGTCCAAGGAAACGAGAAAAAATGAAA
ATGCAGAGTCCCCAAAGAAGGAGCCAAAGCACAAAAAAGCCAAAGTGGCAGATAAGAAAGCCAGATTAAT
TATCCGGAACCTCAGCTTTAAGTGTTCAGAAGATGACTTGAAAGCGGTATTTACTCACTATGGAACTGTT
CTTGAAGTGAATATCCCAAAGAAGCCAGATGGAAAGATGCGTGGTTTTGCTTTTGTTCAGTTCAAAAACC
TCCTTGAAGCAGGAAAAGCTCTCAAAGGCGCGAATATGAAGGAGATAAAAGGACGGACTGTGGCTGTGGA
TTGGGCTGTGGCAAAGGACAAATACAAAGATGCCCAGCATGCTTCTGCCCCAGGTGTAAAGAAGAGCAGT
GACCGGAAGCCTAAGGAATCAGGTAAGAAGAACTGCAGGGTGGAAGAACAAGTAGAAGATAGTGATGATG
AAGAAGATGATGATAGCCATGATGACGAAGAAGAAAGAGAATCAACAATAGCTTCTCCTGTGAGTGTGCA
CAAGAGAGCAGTCAAGAGAGCAGCTCCCGAGGAAAGCATCGAGGAAGACGACTCCTACGAGGACAGTGAC
CTGGAGGAAGGAGGCAGCTCCTATGATGAGGGGACAGTGGACAGTGAGAGCAGCGCTGAAGATCAAGAGG
ATGAAGATGTTCCAGTCTCAGAGAAAAAGAAGAGGAAGTTACCCTCGGATGTGACGGAAGGGAAAACTGT
CTTCATCAGAAATCTTTCATTTGACTCAGAAGAAGAGGCACTTGGCGAGGTCCTCCAACAGTTTGGGGAT
CTTAAGTATGTCCGAGTTGTCTTGCATCCAGACACAGAGCATTCTAAAGGTTGTGCATTCGCACAATTCA
TGACTCAGGAAGCAGCTCAGAAATGTCTTGCAGCGGCCTCTCTAGAGGCTGAGGGTGGTGGGCTTAAACT
GGACGGCCGACAGCTCAAGGTCGACTTAGCTGTGACCCGGGATGAGGCAGCAAAGCTTCAGACAAAGAAG
GTGAAGAAGCCAACTGGAACCCGGAACCTCTATCTGGCCAGAGAAGGCTTGATCCGCGCTGGGACGAAGG
CTGCTGAGGGTGTGAGTGCCGCAGATATGGCCAAACGCGAGCGGTTTGAGCTACTGAAACATCAGAAACT
CAAGAACCAGAATATCTTTGTCTCGCAGACCAGGCTTTGCCTGCACAATCTCCCAAAGGCTGTGGACGAT
AAACAGCTAAGGAAGCTGCTGCTGGAGGCCACTCGAGGAGAGAAGGGGGTTCGAATTAAGGAGTGTAGAG
TCATGCGGGACCTTAAAGGAGTTCATGGGAAAATGAAGGGTCAGTCCCTGGGCTATGCCTTTGCAGAGTT
CCAAAAGCATGAGCATGCCCTCAGAGCCCTCCGCCACTTCAACAACAACCCAGAGATCTTTGGGTCCCAA
AAGAGACCCATAGTGGAGTTCTCTTTAGAAGACCGAAGGAAACTTAAAGTGAAGGAGCTGAGGATCCAAC
GCAGCCTGCAAAAAATGGAATCCAAGCCTGTGACCAGTAAGCCCCAAAAGGAGCAAAAAGAAGTTGGAAA
AGACAAGCAACAGAAAGTAGTTCAGAGCGCCACACAGGATCAGAGTAAGGCGCCTGGAGAGCAGAAAGGG
AAAGCCGGCTCCACCTCGTGGTCAGGCTTCCAGACCAAGGCTGAAGTGGAGCAGGTGGAGCTGCCTGACG
GGAAGAAGAGAAGAAAGGTCCTGGCACTCCCTTCACACCGAGGCCCCAAAATTAGGCTGCGGGACAAAGG
CAAAGTGAAGTCCCTGCCTTCTAGGAAGCCAAAGCCCCAGATGGGCCAGCGGAAGCAAAAGAAGCAGCAG
TTAGCGTCTTCCGTGCAGGCGCCTAAAAGAAAGGCTAAGGAGAATAAGGCAGAAGCCCGCTTCAACCAGC
TGGTTGAACAATATAAGCAGAAGTTGCTGGGCCCTTCTAAAGGAGCGCCCCTCATGAAGAGAAGCAAATG
GTTTGACAGCTGA

Translation (750 aa):
MAGLTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEG
CKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTV
LEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSS
DRKPKESGKKNCRVEEQVEDSDDEEDDDSHDDEEERESTIASPVSVHKRAVKRAAPEESIEEDDSYEDSD
LEEGGSSYDEGTVDSESSAEDQEDEDVPVSEKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGD
LKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAAKLQTKK
VKKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKNQNIFVSQTRLCLHNLPKAVDD
KQLRKLLLEATRGEKGVRIKECRVMRDLKGVHGKMKGQSLGYAFAEFQKHEHALRALRHFNNNPEIFGSQ
KRPIVEFSLEDRRKLKVKELRIQRSLQKMESKPVTSKPQKEQKEVGKDKQQKVVQSATQDQSKAPGEQKG
KAGSTSWSGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKVKSLPSRKPKPQMGQRKQKKQQ
LASSVQAPKRKAKENKAEARFNQLVEQYKQKLLGPSKGAPLMKRSKWFDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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