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Report for CCDS49373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49373.1 Public Mus musculus 13 4833420G17Rik 23 108 98 CCDS HistoryNCBI Gene:67392Re-query CCDS DB by CCDS ID:49373.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49373.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026519.9 ENSMUSP00000026519.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026519.9Link to Ensembl Protein Viewer:ENSMUSP00000026519.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026519Re-query CCDS DB by Protein ID:ENSMUSP00000026519
Original member Current member EBI ENSMUST00000225186.1 ENSMUSP00000153079.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225186.1Link to Ensembl Protein Viewer:ENSMUSP00000153079.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225186Re-query CCDS DB by Protein ID:ENSMUSP00000153079
Original member Current member EBI ENSMUST00000224312.1 ENSMUSP00000153150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224312.1Link to Ensembl Protein Viewer:ENSMUSP00000153150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224312Re-query CCDS DB by Protein ID:ENSMUSP00000153150
Original member Current member NCBI NM_001113550.1 NP_001107022.1 Accepted alive Link to Nucleotide Sequence:NM_001113550.1Link to Protein Sequence:NP_001107022.1Re-query CCDS DB by Nucleotide ID:NM_001113550Re-query CCDS DB by Protein ID:NP_001107022Link to BLAST:NP_001107022.1
Original member Current member NCBI NM_001360805.1 NP_001347734.1 Accepted alive Link to Nucleotide Sequence:NM_001360805.1Link to Protein Sequence:NP_001347734.1Re-query CCDS DB by Nucleotide ID:NM_001360805Re-query CCDS DB by Protein ID:NP_001347734Link to BLAST:NP_001347734.1
Original member Current member NCBI NM_026127.4 NP_080403.4 Accepted alive Link to Nucleotide Sequence:NM_026127.4Link to Protein Sequence:NP_080403.4Re-query CCDS DB by Nucleotide ID:NM_026127Re-query CCDS DB by Protein ID:NP_080403Link to BLAST:NP_080403.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107022.1 639 Q3UJC8-1 639 100% 0 0
NP_001347734.1 639 Q3UJC8-1 639 100% 0 0
NP_080403.4 639 Q3UJC8-1 639 100% 0 0

Chromosomal Locations for CCDS 49373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 119466104 119466304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119466867 119466956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119469515 119470161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119472139 119472240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119473833 119473956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119474833 119474924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119475937 119476006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119477684 119477854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119479428 119479522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119480935 119481030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119484453 119484493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119485727 119485917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGGGAATGGCAGCTGAGGTGCGAATGGTGCTCTATGAGGATGATTCCGTCCAAGTGCACTACGCTTGTG
GGTCCACGCTGCAGCTCTCTCCTTGCGGCTCTGAATTTCTCTTTGAAAAGGCACTTCCTCCCTCAACACA
TCCTTTAGAACAACCAGAGAGAATCCGTCAACGGACACACTTTGTTATTAGCAACTACCGAGAGCAACTT
CAGCGGGCCCTAGATTTTCGAAACTCTTCAGCTACATGCCCTTTTTTATCTGAAAGCATCATACCTCCTG
AAAGAAAAAAGCATATCTTCATTGATTTCTCGGAAGTAGAATGGCCCAGCCTTGACAGAGATGACTGCAT
CATGTACTCGGAGAGTGGCGTGGTGAAGATAACATCCCTGGATGGACACGCGTACCTTTGTCTGCCCAGA
TCTCAGCATGAATTTACAGTACATTTTTTGTGTAAAGTGAGCCAGAGGCCAGATTCATCTGGCATACTAT
CCGAAACACAGAATCAGGACCCCAAAAATAAACTAGTTGAGAAGACCAGAAAAGTCTGCAGATGTGGAAA
TTTATCAGAACAAACGTTAAGGAATAAAGAAAACGAACCTCCTTACCAGATCTTGAAATCTAAAAACGCT
TCAGTGAACACATGTTGTGTGAATGACAGTGAGGGGAGAGGGGAGCTTCCTTCCCTGGGCACAAATCACA
GATGTGTGTACGCATGGGTAAAGCAGGCTTGGTCTGTTGCCGCCTGTCCAGAGGCGTGGAAACACCCTCT
GTCTTTAGCACTTCGTTTTTATAACAAAGTTCGTGCTGCATCTGAAATTGATGCAGATTTCCCTGCGAGT
AGCATTGTGACTTCTGACTGTCCTGAAGAAAGAGGAACGGAGGTTTCTGTCCTTCCCAGGGCCTTGTTAC
TCAGCTGCCCTGCCCCACACATGCACAGGTGGACCTTCTGTGACTCACTTCTACAGAGACAGCCCGATGC
AGAAGACTTTTCCTATCCTGAGCTTGTGAAGGTGGTGTGGTATAAGGGTGTTACATACAGGCTTACCCAT
AAAAATGTAAACTCAATAGAGATTTTTCCTGGAGACGGATCGGTTTTCAAGTCAGAAGGGGCTCATTTTG
GTAACTATTTTACATATTATCCAAGTCAAGAAGAATCAGAAAAGAGAGAAGAGAAAACTTACTCTGTAAA
TAACCTTCCTCCAGACAGACCAGGAAATTTCTTCTCTGTGCGTTCTCTGATTAAACAGGCAACCAGAATT
CTTCAACATTGTGCCAAGATAAGGCTTTCCCTAAGCCACAACTACAGAGTGTGCTGCTGGAAAATGGCAC
CTGGAGTAAGTGTTAGCACTATCCTGCCCGTGCTTCTGAAGGAATCCCTCATCCCAGGCGTGGGGAGATT
CCTTGCCTACTCCGATGACAAAGTCCATGCTGTCTTTTTGGATGGCGTCACAGTAACACTGAATTGGCAT
CTCAGCTCCTCTGCTGAGAAGAAACAAGTAGATCAAGGGCTCAGCTTCGGTTGGTGCAGATTAACTTTTC
CTGATGGACAGGATCAGTTAATTCCAACTGAACACCCTGGAGCGTATGAAAGATATGTGACATCAGTAAT
ATCATGGTGCAGAGGACTAACACAGACTAGCCCAAGACAGGTGCCCACACATCTCTCACCTGCTCTCAAA
GAAAACTGGTCTGTTGCTTCTGAGCTTGAGAAAATACAGAAATTTAACTGGCTGTTGGAAAACAGTGGTG
TCCTCAACCTAACTTCTAGCAAGAATGAGCAGTGTTCTGGTCACTGTAAATCAGGATCTTCAGAAACCTT
GCTGGAAGCAACCAATGAAGAGAGGGTATCGGTAGCATTGAAAAGAACTTCTGAAATCCTCCAGGATATT
GACCGTCTTCTGTCACTCTCTAGAAAGTGA

Translation (639 aa):
MGMAAEVRMVLYEDDSVQVHYACGSTLQLSPCGSEFLFEKALPPSTHPLEQPERIRQRTHFVISNYREQL
QRALDFRNSSATCPFLSESIIPPERKKHIFIDFSEVEWPSLDRDDCIMYSESGVVKITSLDGHAYLCLPR
SQHEFTVHFLCKVSQRPDSSGILSETQNQDPKNKLVEKTRKVCRCGNLSEQTLRNKENEPPYQILKSKNA
SVNTCCVNDSEGRGELPSLGTNHRCVYAWVKQAWSVAACPEAWKHPLSLALRFYNKVRAASEIDADFPAS
SIVTSDCPEERGTEVSVLPRALLLSCPAPHMHRWTFCDSLLQRQPDAEDFSYPELVKVVWYKGVTYRLTH
KNVNSIEIFPGDGSVFKSEGAHFGNYFTYYPSQEESEKREEKTYSVNNLPPDRPGNFFSVRSLIKQATRI
LQHCAKIRLSLSHNYRVCCWKMAPGVSVSTILPVLLKESLIPGVGRFLAYSDDKVHAVFLDGVTVTLNWH
LSSSAEKKQVDQGLSFGWCRLTFPDGQDQLIPTEHPGAYERYVTSVISWCRGLTQTSPRQVPTHLSPALK
ENWSVASELEKIQKFNWLLENSGVLNLTSSKNEQCSGHCKSGSSETLLEATNEERVSVALKRTSEILQDI
DRLLSLSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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