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Report for CCDS51788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51788.1 Public Mus musculus 6 Lsm5 23 108 98 CCDS HistoryNCBI Gene:66373Re-query CCDS DB by CCDS ID:51788.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170382.4 ENSMUSP00000126565.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170382.4Link to Ensembl Protein Viewer:ENSMUSP00000126565.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170382Re-query CCDS DB by Protein ID:ENSMUSP00000126565
Original member Current member NCBI NM_025520.3 NP_079796.1 Accepted alive Link to Nucleotide Sequence:NM_025520.3Link to Protein Sequence:NP_079796.1Re-query CCDS DB by Nucleotide ID:NM_025520Re-query CCDS DB by Protein ID:NP_079796Link to BLAST:NP_079796.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079796.1 91 P62322 91 100% 0 0

Chromosomal Locations for CCDS 51788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56701257 56701289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56702096 56702168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56703006 56703033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56703314 56703409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56704623 56704668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (276 nt):
ATGGCGGCTAACGCGACCACGAACCCGTCCCAACTCCTGCCACTAGAGCTTGTGGACAAATGTATAGGGT
CAAGAATTCACATTGTGATGAAGAGTGATAAAGAAATTGTCGGGACACTTCTAGGATTTGATGACTTTGT
CAATATGGTGTTGGAAGATGTCACAGAATTTGAAATTACACCAGAAGGAAGAAGAATTACAAAATTAGAT
CAAATTCTACTAAATGGAAATAATATAACAATGCTGGTTCCCGGAGGAGAAGGGCCTGAAGTATGA

Translation (91 aa):
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLD
QILLNGNNITMLVPGGEGPEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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