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Report for CCDS27563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27563.1 Public Mus musculus 15 Grina 23 108 98 CCDS HistoryNCBI Gene:66168Re-query CCDS DB by CCDS ID:27563.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27563.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023225.7 ENSMUSP00000023225.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023225.7Link to Ensembl Protein Viewer:ENSMUSP00000023225.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023225Re-query CCDS DB by Protein ID:ENSMUSP00000023225
Original member Current member NCBI NM_023168.3 NP_075657.1 Accepted alive Link to Nucleotide Sequence:NM_023168.3Link to Protein Sequence:NP_075657.1Re-query CCDS DB by Nucleotide ID:NM_023168Re-query CCDS DB by Protein ID:NP_075657Link to BLAST:NP_075657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075657.1 345 Q9ESF4 345 100% 0 0

Chromosomal Locations for CCDS 27563.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76247874 76248177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76248259 76248368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76248449 76248649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76248772 76248900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76248978 76249121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76249217 76249366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGTCCCATGAAAAGAGTTTCTTGGTGTCTGGGGACAGTTATCCTCCCCAAAACATTGTGGGGCCCCAAG
CCCCTATGCCTCCCTATGTTCAGGCTCCCTACCCTGGGGCCCCATACCCACAGGCCCCTTTCCAGCCCTC
TCCCTATGGTCAGCCAGGATATCCCCATGGTCCCAGCCCCTATCCACAGGGTGGTTACCCTCAAGGGCCC
TACCCTCAAGGAGGCTACCCACAGGGGCCATACCCACAGAGCCCCTTCCCGCCCAACCCCTATGGACAGC
CACCACCCTTCCAGGACCCTGGCTCACCTCAGCATGGGAACTACCAGGAGGAAGGGCCTCCATCCTACTA
TGACAACCAGGACTTCCCTGCTGTCAACTGGGACAAGAACATTCGCCAGGCCTTTATCAGAAAGGTGTTC
CTGGTGCTGACCCTGCAGCTGTCGGTGACCCTGTCCACTGTGGCCATTTTCACTTTTGTTGGGGAGGTGA
AGGGCTTTGTCCGGGAGAATGTCTGGACCTACTATGTCTCCTACGCCATCTTCTTCATCTCCCTCATTGT
TCTCAGCTGTTGTGGGGACTTCCGGCGAAAGCATCCCTGGAACCTTGTTGCTCTGTCGATCCTGACCGTC
AGCTTGTCCTACATGGTGGGCATGATAGCCAGCTTTTACAACACGGAGGCAGTCATCATGGCCGTGGGCA
TCACCACAGCTGTCTGCTTCACGGTGGTCATCTTCTCCATGCAGACCCGCTATGACTTCACCTCGTGCAT
GGGCGTGCTCCTGGTGAGTGTTGTGGTGCTCTTCATCTTCGCCATCCTCTGCATCTTCATCCGGAACCGC
ATCCTGGAGATTGTATACGCCTCGCTGGGCGCTCTGCTCTTCACCTGCTTCCTGGCAGTGGACACCCAGC
TACTCCTGGGGAACAAGCAGCTGTCCCTGAGCCCAGAAGAATATGTGTTTGCGGCCCTGAACCTGTACAC
GGACATCATCAACATCTTCCTATATATTCTCACCATCATTGGCCGTGCCAAGGAGTAG

Translation (345 aa):
MSHEKSFLVSGDSYPPQNIVGPQAPMPPYVQAPYPGAPYPQAPFQPSPYGQPGYPHGPSPYPQGGYPQGP
YPQGGYPQGPYPQSPFPPNPYGQPPPFQDPGSPQHGNYQEEGPPSYYDNQDFPAVNWDKNIRQAFIRKVF
LVLTLQLSVTLSTVAIFTFVGEVKGFVRENVWTYYVSYAIFFISLIVLSCCGDFRRKHPWNLVALSILTV
SLSYMVGMIASFYNTEAVIMAVGITTAVCFTVVIFSMQTRYDFTSCMGVLLVSVVVLFIFAILCIFIRNR
ILEIVYASLGALLFTCFLAVDTQLLLGNKQLSLSPEEYVFAALNLYTDIINIFLYILTIIGRAKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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