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Report for CCDS17901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17901.1 Public Mus musculus 3 Lpar3 23 108 98 CCDS HistoryNCBI Gene:65086Re-query CCDS DB by CCDS ID:17901.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039164.3 ENSMUSP00000037712.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039164.3Link to Ensembl Protein Viewer:ENSMUSP00000037712.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000039164Re-query CCDS DB by Protein ID:ENSMUSP00000037712
Original member Current member NCBI NM_022983.4 NP_075359.1 Accepted alive Link to Nucleotide Sequence:NM_022983.4Link to Protein Sequence:NP_075359.1Re-query CCDS DB by Nucleotide ID:NM_022983Re-query CCDS DB by Protein ID:NP_075359Link to BLAST:NP_075359.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075359.1 354 Q9EQ31 354 100% 0 0

Chromosomal Locations for CCDS 17901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146240569 146241304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146284665 146284993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGAATGAGTGTCACTATGACAAGCGCATGGACTTTTTCTACAACAGGAGCAACACAGACACAGCGGACG
AGTGGACAGGGACAAAGCTTGTGATCGTCCTGTGCGTGGGGACGTTCTTCTGCCTCTTTATATTTTTTTC
TAACTCCCTGGTCATTGCTGCGGTGATCACAAACCGGAAGTTCCACTTTCCCTTCTACTACCTGCTGGCT
AACTTAGCTGCTGCGGATTTCTTCGCCGGAATCGCTTACGTGTTCCTGATGTTTAACACTGGCCCGGTGT
CGAAAACGTTGACCGTCAACCGCTGGTTCCTCCGCCAGGGGCTCCTAGACACCAGCCTGACTGCCTCCCT
GGCCAATTTGCTGGTTATTGCTGTGGAAAGACACATGTCCATCATGAGGATGAGAGTCCACAGCAACTTG
ACCAAAAAGCGGGTGACGCTGCTCATTCTGCTGGTGTGGGCCATCGCCATCTTCATGGGGGCCGTCCCCA
CGCTGGGATGGAATTGCCTCTGCAACATCTCGGCCTGCTCTTCTCTGGCTCCCATTTACAGTAGGAGTTA
CCTCATTTTCTGGACTGTGTCCAACCTCCTGGCCTTCTTCATCATGGTGGCGGTATACGTACGCATCTAC
ATGTATGTTAAAAGGAAAACCAACGTCTTATCTCCACACACCAGTGGCTCCATCAGCCGCCGGAGGGCTC
CCATGAAGCTAATGAAGACAGTGATGACCGTCTTAGGCGCCTTCGTGGTGTGCTGGACCCCGGGTCTGGT
GGTTCTGCTGCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACACGTGAAGCGCTGGTTCCTGCTG
CTCGCACTGCTCAACTCCGTCATGAACCCCATCATCTACTCGTACAAGGACGAGGACATGTACAACACCA
TGCGGAAGATGATCTGCTGTGCCCTGCAGGACAGCAATACCGAGAGGCGCCCCTCCCGCAACCCCTCCAC
CATCCACAGCAGGAGCGAGACGGGCAGCCAGTACCTGGAGGACAGCATCAGCCAGGGCCCGGTGTGCAAT
AAAAACGGCTCCTAA

Translation (354 aa):
MNECHYDKRMDFFYNRSNTDTADEWTGTKLVIVLCVGTFFCLFIFFSNSLVIAAVITNRKFHFPFYYLLA
NLAAADFFAGIAYVFLMFNTGPVSKTLTVNRWFLRQGLLDTSLTASLANLLVIAVERHMSIMRMRVHSNL
TKKRVTLLILLVWAIAIFMGAVPTLGWNCLCNISACSSLAPIYSRSYLIFWTVSNLLAFFIMVAVYVRIY
MYVKRKTNVLSPHTSGSISRRRAPMKLMKTVMTVLGAFVVCWTPGLVVLLLDGLNCKQCNVQHVKRWFLL
LALLNSVMNPIIYSYKDEDMYNTMRKMICCALQDSNTERRPSRNPSTIHSRSETGSQYLEDSISQGPVCN
KNGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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