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Report for CCDS47889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47889.1 Public Homo sapiens 8 NECAB1 24 110 108 CCDS HistoryNCBI Gene:64168Re-query CCDS DB by CCDS ID:47889.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47889.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417640.7 ENSP00000387380.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000417640.7Link to Ensembl Protein Viewer:ENSP00000387380.2Re-query CCDS DB by Nucleotide ID:ENST00000417640Re-query CCDS DB by Protein ID:ENSP00000387380
Original member Current member NCBI NM_022351.5 NP_071746.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022351.5Link to Protein Sequence:NP_071746.1Re-query CCDS DB by Nucleotide ID:NM_022351Re-query CCDS DB by Protein ID:NP_071746Link to BLAST:NP_071746.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071746.1 351 Q8N987-1 351 100% 0 0

Chromosomal Locations for CCDS 47889.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 90791887 90791985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90801691 90801715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90824717 90824825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90872128 90872153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90881033 90881130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90917492 90917628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90925535 90925656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90928223 90928299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90934304 90934357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90940786 90940898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90949807 90949884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90951113 90951204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90955487 90955512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGAAGATTCCCAGGAGACATCGCCGTCCTCCAACAACTCCTCGGAGGAGCTCAGCTCTGCTCTGCACC
TG
TCCAAGGGCATGTCGATCTTCCTCGACATACTGAGGAGAGCAGACAAAAATGATGATGGAAAATTATC
C
TTTGAAGAATTCAAAGCATATTTTGCAGATGGTGTTCTCAGTGGAGAAGAATTACACGAGCTTTTCCAT
ACC
ATTGATACACATAATACTAATAATCTTGACACAGAAGAGCTATGTGAATATTTTTCTCAGCACTTGG
GC
GAGTATGAGAATGTACTAGCAGCACTTGAAGACCTGAATCTTTCCATCCTGAAGGCAATGGGCAAAAC
A
AAGAAAGACTACCAAGAAGCCTCCAATTTGGAACAATTCGTAACTAGATTTTTATTGAAGGAAACCCTG
AAT
CAGCTGCAGTCTCTCCAGAATTCCCTGGAATGTGCCATGGAAACTACTGAGGAGCAAACCCGTCAAG
AA
AGGCAAGGGCCAGCCAAGCCAGAAGTCCTGTCGATTCAATGGCCTGGAAAACGATCAAGCCGCCGAGT
C
CAGAGACACAACAGCTTCTCCCCAAACAGCCCTCAGTTTAATGTCAGCGGTCCAGGCTTATTAGAAGAA
GAC
AACCAGTGGATGACCCAGATAAATAGACTCCAGAAATTAATTGATAGACTGGAAAAGAAGGATCTCA
AA
CTCGAACCACCAGAAGAAGAAATTATTGAAGGGAATACTAAATCTCACATCATGCTTGTGCAGCGGCA
G
ATGTCTGTGATAGAAGAGGACCTGGAAGAATTCCAGCTCGCTCTGAAACACTACGTGGAGAGTGCTTCC
TCC
CAAAGTGGATGCTTGCGTATTTCTATACAGAAGCTTTCAAATGAATCTCGCTACATGATCTATGAGT
TC
TGGGAGAATAGTAGTGTATGGAATAGCCACCTTCAGACAAATTATAGCAAGACATTCCAAAGAAGTAA
T
GTGGATTTCTTGGAAACTCCAGAACTCACATCTACAATGCTAGTTCCTGCTTCGTGGTGGATCCTGAAC
AAC
TAG


Translation (351 aa):
MEDSQETSPSSNNSSEELSSALHLSKGMSIFLDILRRADKNDDGKLSFEEFKAYFADGVLSGEELHELFH
T
IDTHNT
NNLDTEELCEYFSQHLGEYENVLAALEDLNLSILKAMGKTKKDYQEASNLEQFVTRFLLKETL
N
QLQSLQNSLECAMETTEEQTRQE
RQGPAKPEVLSIQWPGKRSSRRVQRHNSFSPNSPQFNVSGPGLLEE
D
NQWMTQINRLQKLIDRLEKK
DLKLEPPEEEIIEGNTKSHIMLVQRQMSVIEEDLEEFQLALKHYVESAS
S
QSGCL
RISIQKLSNESRYMIYEFWENSSVWNSHLQTNYSKTFQRSNVDFLETPELTSTMLVPASWWILN
N




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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