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Report for CCDS16794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16794.1 Public Mus musculus 2 Mkks 23 108 98 CCDS HistoryNCBI Gene:59030Re-query CCDS DB by CCDS ID:16794.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028730.12 ENSMUSP00000028730.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028730.12Link to Ensembl Protein Viewer:ENSMUSP00000028730.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028730Re-query CCDS DB by Protein ID:ENSMUSP00000028730
Original member Current member EBI ENSMUST00000110089.8 ENSMUSP00000105716.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110089.8Link to Ensembl Protein Viewer:ENSMUSP00000105716.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110089Re-query CCDS DB by Protein ID:ENSMUSP00000105716
Original member Current member NCBI NM_001141946.1 NP_001135418.1 Accepted alive Link to Nucleotide Sequence:NM_001141946.1Link to Protein Sequence:NP_001135418.1Re-query CCDS DB by Nucleotide ID:NM_001141946Re-query CCDS DB by Protein ID:NP_001135418Link to BLAST:NP_001135418.1
Original member Current member NCBI NM_021527.2 NP_067502.2 Accepted alive Link to Nucleotide Sequence:NM_021527.2Link to Protein Sequence:NP_067502.2Re-query CCDS DB by Nucleotide ID:NM_021527Re-query CCDS DB by Protein ID:NP_067502Link to BLAST:NP_067502.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135418.1 570 Q9JI70 570 100% 0 0
NP_067502.2 570 Q9JI70 570 100% 0 0

Chromosomal Locations for CCDS 16794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 136874266 136874706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136876089 136876199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136877615 136877790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136880251 136881235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGTCTCGGTTAGAAGCTAAGAAGCCATCGTTGTGTAAAACTGAACCATTGACAAGTGAGAAAGTCAGGT
CCACACTTTCTGTCTTGAAAGGAGTCATAGCCTCATGCTATGGCCCTTCAGGGAGGCTGAAGCAGCTACA
CAATGGATTGGGAGGTTGTGTGTACACAACCTCACAGTCCTCAGCCCTGCTTCGAAACCTTTCAGTCACC
CATCCCGTATTAAAGATCCTAACGTCATCCGTGCAGAATCACGTGTCCTGCTTCAGTGACTGCGGCTTAT
TCACAGCCATTCTGTGCTGCAACTTGATTGAAAATATTCAAAGACTAGATTTGACACCCGCAACTGCTAT
TAAATTAAATAAATACCTCTTGAGTCTCTGTACCAGTTATCTCAAGTCTGAAGCCTGTAGTTGTCGAATC
CCAGTTGACTTCAGAAGTACACATACCTTCCTCAGCTTGGTACACAGTATCTTAACAAGCAAACCAGCCT
GTATGCTCACCAGAAAGGAAACAGATCACATAGGTGCTTTGATTTTGAAAGCTTTTTTACTTACAATTCC
AGAAAGTACAGAAGAACGAATGGTTTTAGGGAAGAGTATAATTGTTCCCTTAAAGGGCCAAAGAGTTACA
GATTCTACTGTATTACCTGGACTACTCATTGAAGCATCAGAAGTTCAATTAAGGAGGTTATTACCCACTC
AAAAGGCAAGTGGCCTTAGGGTGGCACTCTTCTGTACATCTTTATCTGGAGATTTTTCTAATGCTGGAGA
AGGAGTGGTGGTGGCCCATTACCAAGTGTCCCTTGAGAATGCAGTTTTAGAGCAGTTGCTTAATCTAGGA
AGGCGACTAGTCACTGATCATGTAGACCTTGTCCTGTGCCAAAAAGTAATCCACCCATCTTTGAAACAGT
TCTTCAGTGAGCGCCACGTTATGGCCATCGACAGAGTTGGGGTGACTCTGATGGAATCTCTAAGCAAAGT
GACAGGAGCAACGCCTATTGGTTCTCTAAACCCAATAGTTTCTACTACTTATGGAAGTGTGAAAGATGTG
TGCTCTGCAAGATTTGGCTCCAAACATTTTTTTCATCTTCTTCCTAATGAGGCCACTGTCTGCACCTTGC
TTCTCTGCAGCAGAAATGACACCGCCTGGGAGGAGCTGAAGCTCACATGTCAAACAGCAATGCACGTCTT
GCAGTTAACAATCAAGGAACCGTGGGTTTTATTGGGAGGTGGCTGTACAGAAACACACTTGGCTGCATAT
GTCAGACACAAGGTTCATCACGAGGCAGAAGCTATTGTCAGAGATGATGGGTGTACTCAGGCAAAGCTGC
ATGTTGCTGCTGAAGCATTTTGCAGTGCTCTGGAGTCCGTTGCTGGCTCTTTGGAACATGATGGTGGTGA
AATCCTCATTGACACGAAGTATGGACACCTTTGGTCCTGTCAAGCAGATTCTGCCTCTGTTGGTAACTGG
TCAGATACGCTGTCACGGTGTGGCTGTGGTTTGTACAACAGCCAGGAAGAGCTCAGCTGGTCTGTCTTAA
GAAGTACTTATCATCCTTTTGCACCACAAACCTGCCTTCCACAGGCAGCTTTGGGCTCAGCCAGTAACCT
GACTGTGGACTGCTTCACTGCCAAGCTGAGTGGCTTACAGGTGGCTGTAGAGACAGCCAATTTGATTTTA
GATCTTTCATATGTCATTGAAGATAAAAACTAA

Translation (570 aa):
MSRLEAKKPSLCKTEPLTSEKVRSTLSVLKGVIASCYGPSGRLKQLHNGLGGCVYTTSQSSALLRNLSVT
HPVLKILTSSVQNHVSCFSDCGLFTAILCCNLIENIQRLDLTPATAIKLNKYLLSLCTSYLKSEACSCRI
PVDFRSTHTFLSLVHSILTSKPACMLTRKETDHIGALILKAFLLTIPESTEERMVLGKSIIVPLKGQRVT
DSTVLPGLLIEASEVQLRRLLPTQKASGLRVALFCTSLSGDFSNAGEGVVVAHYQVSLENAVLEQLLNLG
RRLVTDHVDLVLCQKVIHPSLKQFFSERHVMAIDRVGVTLMESLSKVTGATPIGSLNPIVSTTYGSVKDV
CSARFGSKHFFHLLPNEATVCTLLLCSRNDTAWEELKLTCQTAMHVLQLTIKEPWVLLGGGCTETHLAAY
VRHKVHHEAEAIVRDDGCTQAKLHVAAEAFCSALESVAGSLEHDGGEILIDTKYGHLWSCQADSASVGNW
SDTLSRCGCGLYNSQEELSWSVLRSTYHPFAPQTCLPQAALGSASNLTVDCFTAKLSGLQVAVETANLIL
DLSYVIEDKN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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