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Report for CCDS30670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30670.1 Public Homo sapiens 1 DLGAP3 24 110 108 CCDS HistoryNCBI Gene:58512Re-query CCDS DB by CCDS ID:30670.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30670.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000235180.4 ENSP00000235180.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000235180.4Link to Ensembl Protein Viewer:ENSP00000235180.4Re-query CCDS DB by Nucleotide ID:ENST00000235180Re-query CCDS DB by Protein ID:ENSP00000235180
Original member Current member EBI ENST00000373347.6 ENSP00000362444.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373347.6Link to Ensembl Protein Viewer:ENSP00000362444.1Re-query CCDS DB by Nucleotide ID:ENST00000373347Re-query CCDS DB by Protein ID:ENSP00000362444
Original member Current member NCBI NM_001080418.3 NP_001073887.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080418.3Link to Protein Sequence:NP_001073887.1Re-query CCDS DB by Nucleotide ID:NM_001080418Re-query CCDS DB by Protein ID:NP_001073887Link to BLAST:NP_001073887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073887.1 979 O95886 979 100% 0 0

Chromosomal Locations for CCDS 30670.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 34866083 34866301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34867048 34867191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34867536 34867627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34868605 34869089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34884978 34885063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34885478 34885791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34886072 34886285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34899669 34899741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34900068 34900273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34904277 34905383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2940 nt):
ATGAGGGGTTACCATGGCGACCGAGGCAGCCATCCCCGCCCAGCCCGCTTTGCTGACCAACAGCATATGG
ACGTGGGCCCTGCTGCCAGGGCCCCATACCTGCTGGGCTCCAGGGAGGCCTTCTCCACCGAGCCCCGCTT
CTGTGCCCCGAGAGCTGGCCTGGGACACATTTCTCCTGAAGGGCCCCTGAGCCTGAGTGAGGGGCCGTCG
GTAGGCCCTGAGGGAGGGCCAGCGGGGGCCGGGGTTGGGGGGGGTAGCAGCACCTTCCCCAGGATGTACC
CTGGCCAGGGCCCCTTCGACACCTGTGAAGACTGTGTGGGCCACCCACAGGGCAAGGGTGCCCCCCGCCT
GCCTCCTACACTCCTGGATCAGTTTGAAAAGCAGTTGCCAGTTCAACAAGATGGCTTCCACACACTACCA
TACCAGCGAGGGCCAGCAGGGGCAGGGCCCGGGCCAGCGCCAGGGACGGGCACTGCCCCAGAGCCCCGCA
GTGAGAGCCCTAGCCGCATCCGGCACCTGGTTCATTCTGTGCAGAAGCTCTTTGCCAAGTCCCACTCTCT
GGAGGCGCCGGGGAAGCGGGACTATAATGGGCCCAAGGCTGAGGGAAGAGGTGGCTCTGGAGGAGACAGC
TACCCCGGCCCGGGCTCTGGAGGCCCCCACACCTCCCATCACCACCATCACCACCACCATCACCACCACC
ACCAGTCCCGGCACGGCAAGAGGAGCAAGAGCAAGGACCGCAAGGGGGATGGGCGGCACCAGGCCAAGTC
CACAGGCTGGTGGAGTTCCGATGACAACTTGGACAGTGATAGCGGCTTCCTGGCGGGTGGGAGGCCCCCT
GGGGAGCCTGGTGGTCCCTTCTGCCTGGAGGGTCCAGATGGGTCCTACCGGGACTTGAGCTTCAAGGGGC
GCTCGGGCGGGTCGGAAGGCCGCTGCCTTGCCTGCACTGGCATGTCCATGTCACTGGATGGACAGTCGGT
CAAGCGAAGTGCCTGGCATACCATGATGGTCAGCCAGGGCCGGGATGGATACCCGGGGGCCGGGCCAGGC
AAGGGGCTCCTGGGTCCGGAGACCAAGGCCAAAGCCAGGACTTATCACTATCTGCAGGTGCCGCAAGATG
ACTGGGGGGGTTACCCCACCGGTGGCAAGGATGGGGAGATCCCCTGCCGCAGGATGCGGAGCGGCAGCTA
CATCAAAGCCATGGGGGATGAGGAGAGCGGAGACTCAGACGGCAGCCCCAAGACATCTCCCAAAGCAGTC
GCCCGACGCTTCACCACCCGTCGCTCCTCCAGCGTGGACCAGGCCAGGATCAACTGCTGTGTCCCACCCC
GGATCCACCCCCGGAGCTCCATCCCTGGCTACAGCCGTTCCCTCACCACTGGACAGCTCAGCGATGAGTT
GAACCAGCAGCTGGAGGCCGTGTGCGGGTCGGTGTTTGGGGAGCTGGAGTCCCAGGCCGTGGACGCCCTG
GACCTGCCCGGCTGTTTCCGCATGCGGAGCCACAGCTACCTCCGGGCCATCCAGGCCGGCTGCTCTCAAG
ACGACGACTGCCTGCCCCTCCTCGCTACCCCTGCCGCTGTCTCAGGGAGGCCCGGCTCCTCCTTCAACTT
CAGAAAGGCCCCGCCCCCCATCCCGCCGGGAAGCCAGGCCCCGCCCCGCATCTCCATCACCGCCCAGAGC
AGCACCGACTCCGCGCACGAGAGCTTCACGGCGGCCGAGGGCCCCGCCCGGCGCTGCAGCTCCGCCGACG
GGCTGGACGGCCCCGCCATGGGTGCGCGCACACTGGAGTTGGCGCCGGTGCCGCCCCGGGCCAGCCCCAA
GCCCCCCACACTCATCATCAAGACCATCCCTGGCAGGGAGGAGCTGCGGAGCCTGGCGCGGCAGCGGAAG
TGGCGGCCGTCCATTGGGGTGCAGGTGGAGACGATCTCAGATTCGGACACCGAGAACAGGAGCCGGAGGG
AGTTCCACTCTATTGGCGTGCAGGTGGAAGAGGACAAGAGGCGAGCAAGGTTCAAGCGCTCCAATAGTGT
GACGGCTGGCGTGCAGGCAGACCTGGAGCTGGAGGGCCTGGCAGGCCTGGCCACGGTGGCCACAGAAGAC
AAGGCCCTGCAGTTTGGACGCTCCTTCCAGAGGCACGCCTCTGAGCCCCAGCCTGGGCCCCGGGCCCCCA
CCTACTCAGTCTTCCGCACGGTCCACACGCAGGGCCAGTGGGCCTACCGCGAGGGCTACCCACTGCCGTA
CGAGCCGCCGGCCACCGATGGGTCGCCCGGCCCTGCCCCCGCCCCCACCCCCGGCCCTGGGGCCGGCCGC
CGTGACTCCTGGATAGAGCGCGGTTCACGTAGCCTCCCCGACTCAGGCCGCGCATCCCCCTGCCCACGCG
ACGGCGAGTGGTTCATCAAGATGCTGCGGGCAGAGGTGGAGAAGCTGGAGCACTGGTGCCAGCAGATGGA
GCGTGAGGCGGAGGACTATGAGCTACCCGAGGAGATCCTGGAGAAGATCCGCAGTGCTGTGGGCAGCACA
CAACTTCTCCTGTCCCAGAAGGTTCAGCAGTTCTTCCGGCTGTGTCAGCAAAGCATGGATCCCACTGCGT
TCCCTGTGCCCACCTTCCAGGACCTGGCGGGTTTCTGGGACCTCCTACAGCTCTCCATCGAGGATGTGAC
CCTCAAGTTCCTGGAGCTACAGCAACTCAAGGCCAACAGCTGGAAACTCCTGGAGCCTAAGGAGGAGAAG
AAGGTCCCTCCGCCGATACCAAAGAAGCCCCTGCGGGGCCGGGGCGTGCCGGTGAAGGAGCGCTCCCTGG
ACTCCGTGGACCGGCAGCGGCAGGAAGCGCGCAAGCGGCTCCTGGCGGCCAAGCGCGCCGCTTCCTTCCG
CCACAGCTCGGCCACCGAGAGCGCCGACAGCATCGAGATCTACATCCCCGAGGCCCAGACCAGGCTGTGA

Translation (979 aa):
MRGYHGDRGSHPRPARFADQQHMDVGPAARAPYLLGSREAFSTEPRFCAPRAGLGHISPEGPLSLSEGPS
VGPEGGPAGAGVGGGSSTFPRMYPGQGPFDTCEDCVGHPQGKGAPRLPPTLLDQFEKQLPVQQDGFHTLP
YQRGPAGAGPGPAPGTGTAPEPRSESPSRIRHLVHSVQKLFAKSHSLEAPGKRDYNGPKAEGRGGSGGDS
YPGPGSGGPHTSHHHHHHHHHHHHQSRHGKRSKSKDRKGDGRHQAKSTGWWSSDDNLDSDSGFLAGGRPP
GEPGGPFCLEGPDGSYRDLSFKGRSGGSEGRCLACTGMSMSLDGQSVKRSAWHTMMVSQGRDGYPGAGPG
KGLLGPETKAKARTYHYLQVPQDDWGGYPTGGKDGEIPCRRMRSGSYIKAMGDEESGDSDGSPKTSPKAV
ARRFTTRRSSSVDQARINCCVPPRIHPRSSIPGYSRSLTTGQLSDELNQQLEAVCGSVFGELESQAVDAL
DLPGCFRMRSHSYLRAIQAGCSQDDDCLPLLATPAAVSGRPGSSFNFRKAPPPIPPGSQAPPRISITAQS
STDSAHESFTAAEGPARRCSSADGLDGPAMGARTLELAPVPPRASPKPPTLIIKTIPGREELRSLARQRK
WRPSIGVQVETISDSDTENRSRREFHSIGVQVEEDKRRARFKRSNSVTAGVQADLELEGLAGLATVATED
KALQFGRSFQRHASEPQPGPRAPTYSVFRTVHTQGQWAYREGYPLPYEPPATDGSPGPAPAPTPGPGAGR
RDSWIERGSRSLPDSGRASPCPRDGEWFIKMLRAEVEKLEHWCQQMEREAEDYELPEEILEKIRSAVGST
QLLLSQKVQQFFRLCQQSMDPTAFPVPTFQDLAGFWDLLQLSIEDVTLKFLELQQLKANSWKLLEPKEEK
KVPPPIPKKPLRGRGVPVKERSLDSVDRQRQEARKRLLAAKRAASFRHSSATESADSIEIYIPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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