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Report for CCDS24875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24875.1 Public Mus musculus 11 Rangrf 23 108 98 CCDS HistoryNCBI Gene:57785Re-query CCDS DB by CCDS ID:24875.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038644.4 ENSMUSP00000038485.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038644.4Link to Ensembl Protein Viewer:ENSMUSP00000038485.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038644Re-query CCDS DB by Protein ID:ENSMUSP00000038485
Original member Current member NCBI NM_021329.3 NP_067304.1 Accepted alive Link to Nucleotide Sequence:NM_021329.3Link to Protein Sequence:NP_067304.1Re-query CCDS DB by Nucleotide ID:NM_021329Re-query CCDS DB by Protein ID:NP_067304Link to BLAST:NP_067304.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067304.1 185 Q9JIB0 185 100% 0 0

Chromosomal Locations for CCDS 24875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 68972621 68972741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68972943 68973028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68973117 68973273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68973441 68973557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68973642 68973718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGGAGCCCAACAGAAACTGTCCACTGTTCGGAGGCGCCTTCTCCGCCATCCTCCCTACAGGGGCCATTG
ATGTGAGTGACCTCCGACCGGTGCCAGACAACCAAGAAGTTTTCTGCCATCCTGTGACCGACCAGAGTCT
GATCATAGAACTTCTGGAGCTGCAGGCCCACGTGCAGGGCGAAGCGGCTGCGCGGTACCATTTTGAGGAC
GTTGGCCGGGTGCAGGGGGCTAGGGCTGTGCACGTGCTATCTGTGCAGCCTCTCTGTTTGGAGAACTTAT
CCCTGAGAGGCTGCTGTCAGGATGCCTGGTCCCTTTCTGGCAAGCAGCAGGTAGCTAAAGAAAACCAGCA
GGTAGCAAAGGATGTCACACTGCATCAGGCCTTGCTGCGGCTGCCCCAGTATCAGACTGATCTTTTGCTC
ACCTTCAATCAGCCCCCGTGTCACAGCAGGTCTCTTGGCCCTGAAAATCTGTCATGTCCACCTTGGAGCC
TGAGTAACTTTGAACAGCTGGTAACTAGTTTGACTCTTCATGATCCCAACCTCTTTGGTCCCCAGTAA

Translation (185 aa):
MEPNRNCPLFGGAFSAILPTGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYHFED
VGRVQGARAVHVLSVQPLCLENLSLRGCCQDAWSLSGKQQVAKENQQVAKDVTLHQALLRLPQYQTDLLL
TFNQPPCHSRSLGPENLSCPPWSLSNFEQLVTSLTLHDPNLFGPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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