NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22068.1 Public Mus musculus 8 Retn 23 108 98 CCDS HistoryNCBI Gene:57264Re-query CCDS DB by CCDS ID:22068.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012849.14 ENSMUSP00000012849.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012849.14Link to Ensembl Protein Viewer:ENSMUSP00000012849.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000012849Re-query CCDS DB by Protein ID:ENSMUSP00000012849
Original member Current member EBI ENSMUST00000169234.2 ENSMUSP00000133024.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169234.2Link to Ensembl Protein Viewer:ENSMUSP00000133024.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169234Re-query CCDS DB by Protein ID:ENSMUSP00000133024
Original member Current member NCBI NM_001204959.1 NP_001191888.1 Accepted alive Link to Nucleotide Sequence:NM_001204959.1Link to Protein Sequence:NP_001191888.1Re-query CCDS DB by Nucleotide ID:NM_001204959Re-query CCDS DB by Protein ID:NP_001191888Link to BLAST:NP_001191888.1
Original member Current member NCBI NM_022984.4 NP_075360.1 Accepted alive Link to Nucleotide Sequence:NM_022984.4Link to Protein Sequence:NP_075360.1Re-query CCDS DB by Nucleotide ID:NM_022984Re-query CCDS DB by Protein ID:NP_075360Link to BLAST:NP_075360.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191888.1 114 Q99P87 114 100% 0 0
NP_075360.1 114 Q99P87 114 100% 0 0

Chromosomal Locations for CCDS 22068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3656016 3656145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3656908 3656985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3657250 3657386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGAAGAACCTTTCATTTCCCCTCCTTTTCCTTTTCTTCCTTGTCCCTGAACTGCTGGGCTCCAGCATGC
CACTGTGTCCCATCGATGAAGCCATCGACAAGAAGATCAAACAAGACTTCAACTCCCTGTTTCCAAATGC
AATAAAGAACATTGGCTTAAATTGCTGGACAGTCTCCTCCAGAGGGAAGTTGGCCTCCTGCCCAGAAGGC
ACAGCAGTCTTGAGCTGCTCCTGTGGCTCTGCCTGTGGCTCGTGGGACATTCGTGAAGAAAAAGTGTGTC
ACTGCCAGTGTGCAAGGATAGACTGGACAGCAGCCCGCTGCTGTAAGCTGCAGGTCGCTTCCTGA

Translation (114 aa):
MKNLSFPLLFLFFLVPELLGSSMPLCPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEG
TAVLSCSCGSACGSWDIREEKVCHCQCARIDWTAARCCKLQVAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH