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Report for CCDS4138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4138.1 Public Homo sapiens 5 PHAX 24 110 108 CCDS HistoryNCBI Gene:51808Re-query CCDS DB by CCDS ID:4138.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4138.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297540.5 ENSP00000297540.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297540.5Link to Ensembl Protein Viewer:ENSP00000297540.4Re-query CCDS DB by Nucleotide ID:ENST00000297540Re-query CCDS DB by Protein ID:ENSP00000297540
Original member Current member NCBI NM_032177.4 NP_115553.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032177.4Link to Protein Sequence:NP_115553.2Re-query CCDS DB by Nucleotide ID:NM_032177Re-query CCDS DB by Protein ID:NP_115553Link to BLAST:NP_115553.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115553.2 394 Q9H814 394 100% 0 0

Chromosomal Locations for CCDS 4138.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 126600963 126601058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126603570 126604183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126608364 126608484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126617250 126617333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126624575 126624844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGGCGTTGGAGGTCGGCGATATGGAAGATGGGCAGCTTTCCGACTCGGATTCCGACATGACGGTCGCAC
CCAGCGACAGGCCGCTGCAATTGCCAAAAGTGCTAGGTGGCGACAGTGCTATGAGGGCCTTCCAGAACAC
GGCAACTGCATGTGCACCAGTATCACATTATCGAGCTGTTGAAAGTGTGGATTCAAGTGAAGAAAGTTTT
TCTGATTCAGATGATGATAGCTGTCTTTGGAAACGCAAACGACAGAAATGTTTTAACCCTCCTCCCAAAC
CAGAGCCTTTTCAGTTTGGCCAGAGCAGTCAGAAACCACCTGTTGCTGGAGGAAAGAAGATTAACAACAT
ATGGGGTGCTGTGCTGCAGGAACAGAATCAAGATGCAGTGGCCACTGAACTTGGTATCTTGGGAATGGAG
GGCACTATTGACAGAAGCAGACAATCCGAGACCTACAATTATTTGCTTGCCAAGAAACTTAGGAAGGAAT
CTCAAGAGCATACAAAAGATCTAGACAAGGAACTAGATGAATATATGCATGGTGGCAAAAAAATGGGATC
AAAGGAAGAGGAAAATGGGCAAGGTCATCTCAAAAGGAAACGACCTGTCAAAGACAGGCTAGGGAACAGA
CCAGAAATGAACTATAAAGGTCGATACGAGATCACAGCGGAAGATTCTCAAGAGAAAGTGGCTGATGAAA
TTTCATTCAGGTTACAGGAACCAAAGAAAGACCTGATAGCCCGAGTAGTGAGGATTATTGGTAACAAAAA
GGCAATTGAACTTCTGATGGAAACCGCTGAAGTTGAACAAAATGGTGGTCTCTTTATAATGAATGGTAGT
CGAAGAAGAACACCAGGTGGAGTTTTTCTGAATCTCTTGAAAAACACTCCTAGTATCAGCGAGGAACAAA
TTAAGGACATTTTCTACATTGAAAACCAAAAGGAATATGAAAATAAAAAAGCTGCTAGGAAGAGGAGAAC
ACAAGTGTTGGGGAAAAAGATGAAACAAGCTATTAAAAGTCTAAATTTTCAAGAAGATGATGATACATCA
CGAGAAACTTTTGCAAGTGACACGAATGAGGCCTTGGCCTCTCTTGATGAGTCACAGGAAGGACATGCAG
AAGCCAAGTTGGAGGCAGAGGAAGCCATTGAAGTTGATCATTCTCATGATTTGGACATCTTTTAA

Translation (394 aa):
MALEVGDMEDGQLSDSDSDMTVAPSDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAVESVDSSEESF
SDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGAVLQEQNQDAVATELGILGME
GTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMHGGKKMGSKEEENGQGHLKRKRPVKDRLGNR
PEMNYKGRYEITAEDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGS
RRRTPGGVFLNLLKNTPSISEEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTS
RETFASDTNEALASLDESQEGHAEAKLEAEEAIEVDHSHDLDIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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