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Report for CCDS14400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14400.1 Public Homo sapiens X PDZD11 24 110 108 CCDS HistoryNCBI Gene:51248Re-query CCDS DB by CCDS ID:14400.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14400.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239666.9 ENSP00000239666.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239666.9Link to Ensembl Protein Viewer:ENSP00000239666.4Re-query CCDS DB by Nucleotide ID:ENST00000239666Re-query CCDS DB by Protein ID:ENSP00000239666
Original member Current member EBI ENST00000374454.1 ENSP00000363578.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374454.1Link to Ensembl Protein Viewer:ENSP00000363578.1Re-query CCDS DB by Nucleotide ID:ENST00000374454Re-query CCDS DB by Protein ID:ENSP00000363578
Original member Current member EBI ENST00000695560.1 ENSP00000512017.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695560.1Link to Ensembl Protein Viewer:ENSP00000512017.1Re-query CCDS DB by Nucleotide ID:ENST00000695560Re-query CCDS DB by Protein ID:ENSP00000512017
Original member Current member EBI ENST00000473667.6 ENSP00000512018.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000473667.6Link to Ensembl Protein Viewer:ENSP00000512018.1Re-query CCDS DB by Nucleotide ID:ENST00000473667Re-query CCDS DB by Protein ID:ENSP00000512018
Original member Current member EBI ENST00000486461.2 ENSP00000512019.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000486461.2Link to Ensembl Protein Viewer:ENSP00000512019.1Re-query CCDS DB by Nucleotide ID:ENST00000486461Re-query CCDS DB by Protein ID:ENSP00000512019
Original member Current member NCBI NM_001370174.1 NP_001357103.1 Accepted alive Link to Nucleotide Sequence:NM_001370174.1Link to Protein Sequence:NP_001357103.1Re-query CCDS DB by Nucleotide ID:NM_001370174Re-query CCDS DB by Protein ID:NP_001357103Link to BLAST:NP_001357103.1
Original member Current member NCBI NM_001370175.1 NP_001357104.1 Accepted alive Link to Nucleotide Sequence:NM_001370175.1Link to Protein Sequence:NP_001357104.1Re-query CCDS DB by Nucleotide ID:NM_001370175Re-query CCDS DB by Protein ID:NP_001357104Link to BLAST:NP_001357104.1
Original member Current member NCBI NM_001370176.1 NP_001357105.1 Accepted alive Link to Nucleotide Sequence:NM_001370176.1Link to Protein Sequence:NP_001357105.1Re-query CCDS DB by Nucleotide ID:NM_001370176Re-query CCDS DB by Protein ID:NP_001357105Link to BLAST:NP_001357105.1
Original member Current member NCBI NM_001370177.1 NP_001357106.1 Accepted alive Link to Nucleotide Sequence:NM_001370177.1Link to Protein Sequence:NP_001357106.1Re-query CCDS DB by Nucleotide ID:NM_001370177Re-query CCDS DB by Protein ID:NP_001357106Link to BLAST:NP_001357106.1
Original member Current member NCBI NM_016484.5 NP_057568.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016484.5Link to Protein Sequence:NP_057568.1Re-query CCDS DB by Nucleotide ID:NM_016484Re-query CCDS DB by Protein ID:NP_057568Link to BLAST:NP_057568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357103.1 140 Q5EBL8-1 140 100% 0 0
NP_001357104.1 140 Q5EBL8-1 140 100% 0 0
NP_001357105.1 140 Q5EBL8-1 140 100% 0 0
NP_001357106.1 140 Q5EBL8-1 140 100% 0 0
NP_057568.1 140 Q5EBL8-1 140 100% 0 0

Chromosomal Locations for CCDS 14400.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 70287082 70287116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70287276 70287336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70287732 70287830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70288117 70288173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70288430 70288513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70289255 70289341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGACAGCCGGATTCCTTATGATGACTACCCGGTGGTTTTCTTGCCTGCCTATGAGAATCCTCCAGCAT
GGATTCCTCCTCATGAGAGGGTACACCACCCGGACTACAACAATGAGTTGACCCAGTTTCTGCCCCGAAC
CATCACACTGAAGAAGCCTCCTGGAGCTCAGTTGGGATTTAACATCCGAGGAGGAAAGGCCTCCCAGCTA
GGCATCTTCATCTCCAAGGTGATTCCTGACTCTGATGCACATAGAGCAGGACTGCAGGAAGGGGACCAAG
TTCTAGCTGTGAATGATGTGGATTTCCAAGATATTGAGCACAGCAAGGCTGTTGAGATCCTGAAGACAGC
TCGTGAAATCAGCATGCGTGTGCGCTTCTTTCCCTACAATTATCATCGCCAAAAAGAGAGGACTGTGCAC
TAG

Translation (140 aa):
MDSRIPYDDYPVVFLPAYENPPAWIPPHERVHHPDYNNELTQFLPRTITLKKPPGAQLGFNIRGGKASQL
GIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRFFPYNYHRQKERTVH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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