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Report for CCDS23029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23029.1 Public Mus musculus 9 Or8d2 23 108 98 CCDS HistoryNCBI Gene:404322Re-query CCDS DB by CCDS ID:23029.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072977.4 ENSMUSP00000072744.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072977.4Link to Ensembl Protein Viewer:ENSMUSP00000072744.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000072977Re-query CCDS DB by Protein ID:ENSMUSP00000072744
Original member Current member EBI ENSMUST00000217350.1 ENSMUSP00000149849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217350.1Link to Ensembl Protein Viewer:ENSMUSP00000149849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217350Re-query CCDS DB by Protein ID:ENSMUSP00000149849
Original member Current member NCBI NM_207560.1 NP_997443.1 Accepted alive Link to Nucleotide Sequence:NM_207560.1Link to Protein Sequence:NP_997443.1Re-query CCDS DB by Nucleotide ID:NM_207560Re-query CCDS DB by Protein ID:NP_997443Link to BLAST:NP_997443.1

Chromosomal Locations for CCDS 23029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38848116 38849042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGAATCATTCTTCAGTGATTGATTTTATCCTCGAAGGATTAACAAAACGCCCAGAGCTTCAGCTCCCAC
TGTTCCTCTTGTTTCTGGCAATATATGTGATCACAGTAGTGGGAAACTTGGGCATGATCCTCTTAATCAC
CATTAGTTCTCAACTTCACTCTCCAATGTATTATTTTCTCAGTCACTTATCCTTCATTGACCTCTGCTAT
TCCTCTGTCATTACACCAAAGATGTTGGTGAACTTTGTATGTGAGAAGAACACAATCTCCTTTTTGGAGT
GCATGACTCAGCTTTACTTCTTCCTCATTTTTGTTATTGCAGAAGGCTACCTGCTGACAGCCATGGCCTA
TGACCGCTATGTTGCCATCTGTAGCCCACTGCTTTATAACATTGTCATGTCCCACAAGGTCTGTTCCATA
ATGATGGCTGTGGTATACTCACTGGGCTTCTTTGGGGCTACTGTCCATACAACCCGTATGACAATGTTGT
CCTTCTGTGGGTCTCATATTGTCAGCCACTATTTTTGTGATATCCTACCTTTGTTGACTCTGTCTTGCTC
AAGCACCCATATCAACGAGGTACTGCTGTTTATTATTGGTGGAGTTAATACCCTTGCACCTACACTGGCT
GTCATCATCTCTTATGCTTTCATTCTGACAAGTATTCTTCGCATCCGCTCCAATGAAGGACGTTCCAAAG
CATTTGGCACCTGTAGCTCCCACATTATGGCTGTGGGAATCTTCTTTGGGTCAATTACTTTCATGTATTT
CAAGCCACCTTCCAGTAATAATATGGAACAGGAGAAAGTGTCCTCTGTGTTCTACACCACAGTGATCCCT
ATGCTAAATCCCCTTATATACAGTCTGAGGAACAAGGATGTAAAGAATGCACTGAAAAAGATGGTTGGTG
GAAGGCAGCTATCCTGA

Translation (308 aa):
MNHSSVIDFILEGLTKRPELQLPLFLLFLAIYVITVVGNLGMILLITISSQLHSPMYYFLSHLSFIDLCY
SSVITPKMLVNFVCEKNTISFLECMTQLYFFLIFVIAEGYLLTAMAYDRYVAICSPLLYNIVMSHKVCSI
MMAVVYSLGFFGATVHTTRMTMLSFCGSHIVSHYFCDILPLLTLSCSSTHINEVLLFIIGGVNTLAPTLA
VIISYAFILTSILRIRSNEGRSKAFGTCSSHIMAVGIFFGSITFMYFKPPSSNNMEQEKVSSVFYTTVIP
MLNPLIYSLRNKDVKNALKKMVGGRQLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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