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Report for CCDS34150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34150.1 Public Homo sapiens 5 PLCXD3 24 110 108 CCDS HistoryNCBI Gene:345557Re-query CCDS DB by CCDS ID:34150.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34150.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328457.5 ENSP00000333751.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328457.5Link to Ensembl Protein Viewer:ENSP00000333751.3Re-query CCDS DB by Nucleotide ID:ENST00000328457Re-query CCDS DB by Protein ID:ENSP00000333751
Original member Current member EBI ENST00000377801.8 ENSP00000367032.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377801.8Link to Ensembl Protein Viewer:ENSP00000367032.3Re-query CCDS DB by Nucleotide ID:ENST00000377801Re-query CCDS DB by Protein ID:ENSP00000367032
Original member Current member NCBI NM_001005473.3 NP_001005473.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005473.3Link to Protein Sequence:NP_001005473.1Re-query CCDS DB by Nucleotide ID:NM_001005473Re-query CCDS DB by Protein ID:NP_001005473Link to BLAST:NP_001005473.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005473.1 321 Q63HM9 321 100% 0 0

Chromosomal Locations for CCDS 34150.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 41313617 41313770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41381826 41382534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41510424 41510526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGCCTCGTCTCAGGGGAAAAACGAGCTGAAATTAGCCGACTGGATGGCAACTCTGCCGGAGAGCATGC
ACAGCATCCCCCTCACCAATTTAGCCATTCCAGGGTCTCATGATTCCTTCAGCTTCTACATTGATGAAGC
CTCTCCAGTAGGTCCTGAGCAGCCAGAAACTGTCCAGAATTTTGTCTCTGTGTTTGGAACTGTGGCCAAA
AAGCTCATGCGGAAATGGTTAGCCACTCAGACAATGAATTTTACTGGCCAGCTAGGAGCTGGAATTCGTT
ATTTTGATCTTCGAATTTCCACCAAGCCCAGAGACCCCGACAATGAACTCTATTTTGCTCATGGTTTGTT
CAGTGCCAAAGTCAATGAAGGCCTTGAGGAGATCAATGCATTCCTCACAGATCACCATAAGGAGGTAGTG
TTCTTGGACTTCAACCACTTTTATGGGATGCAGAAATATCACCATGAAAAACTGGTCCAAATGCTGAAAG
ACATCTATGGAAATAAAATGTGCCCAGCGATTTTTGCCCAGGAAGTTAGTTTAAAGTACCTGTGGGAGAA
GGACTATCAAGTGCTGGTCTTCTACCATAGTCCAGTGGCTCTGGAAGTGCCCTTTCTCTGGCCTGGGCAG
ATGATGCCAGCACCCTGGGCCAACACCACAGACCCCGAGAAACTGATCCAGTTTCTTCAAGCATCCATCA
CTGAGAGAAGAAAGAAGGGATCGTTTTTTATATCTCAGGTGGTGCTGACCCCCAAAGCTAGCACTGTGGT
CAAAGGGGTGGCAAGTGGCCTCAGAGAAACAATCACAGAAAGAGCTCTTCCTGCCATGATGCAGTGGGTC
CGCACGCAGAAGCCAGGAGAGAGTGGCATCAATATTGTCACTGCCGATTTTGTAGAACTTGGTGACTTTA
TCAGCACTGTCATAAAGCTCAACTATGTCTTTGATGAAGGAGAAGCCAACACTTGA

Translation (321 aa):
MASSQGKNELKLADWMATLPESMHSIPLTNLAIPGSHDSFSFYIDEASPVGPEQPETVQNFVSVFGTVAK
KLMRKWLATQTMNFTGQLGAGIRYFDLRISTKPRDPDNELYFAHGLFSAKVNEGLEEINAFLTDHHKEVV
FLDFNHFYGMQKYHHEKLVQMLKDIYGNKMCPAIFAQEVSLKYLWEKDYQVLVFYHSPVALEVPFLWPGQ
MMPAPWANTTDPEKLIQFLQASITERRKKGSFFISQVVLTPKASTVVKGVASGLRETITERALPAMMQWV
RTQKPGESGINIVTADFVELGDFISTVIKLNYVFDEGEANT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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