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Report for CCDS18363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18363.1 Public Mus musculus 4 Mysm1 23 108 98 CCDS HistoryNCBI Gene:320713Re-query CCDS DB by CCDS ID:18363.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18363.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075872.3 ENSMUSP00000075269.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075872.3Link to Ensembl Protein Viewer:ENSMUSP00000075269.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075872Re-query CCDS DB by Protein ID:ENSMUSP00000075269
Original member NCBI NM_177239.3 NP_796213.2 Updated not alive Link to Nucleotide Sequence:NM_177239.3Link to Protein Sequence:NP_796213.2Re-query CCDS DB by Nucleotide ID:NM_177239Re-query CCDS DB by Protein ID:NP_796213
Current member NCBI NM_177239.4 NP_796213.2 Accepted alive Link to Nucleotide Sequence:NM_177239.4Link to Protein Sequence:NP_796213.2Re-query CCDS DB by Nucleotide ID:NM_177239Re-query CCDS DB by Protein ID:NP_796213Link to BLAST:NP_796213.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796213.2 819 Q69Z66-1 819 100% 0 0

Chromosomal Locations for CCDS 18363.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 94946965 94947123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94948102 94948159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94948329 94948434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94950926 94951058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94952174 94952362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94952863 94952937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94953498 94953548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94953872 94953926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94957050 94957138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94958913 94958990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94960328 94960431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94961703 94961833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94965129 94965871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94967870 94967968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94968980 94969058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94970512 94970535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94970624 94970701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94972918 94972988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94975217 94975292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94979004 94979065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2460 nt):
ATGGAGGCGGAGGAGGCGGATGTGGATGTGGAAGGAGATGTTGCGGCGGCTGCACAGCCGGGAAATGATG
AAAGTACAGCATCAGTTTTTCAAGATCACTATCTTGATTCAACGTGGAGAAGGGAAAATGGCTGTCTTCC
TTGGACTCTGGATAGCACCATCAGTGATGAGAACAGAGCTATCATTGAGAAAATGCTGTTGGAAGAAGAG
TATTATTTATCTAATAAATCACTTCCAGGAAAATTCTGGGTTAATCAAAAGGAGGATAATAAAAAATACA
CAAACAGCCTGCAGAAGTCATCAAAAGCCATGGTAGATTCTCCTGCAAAACCAGCCAGTCATTCAGTAAA
GTGGACAGTAGAAGAGAAAGAGCTGTTTGAACAAGGACTGGCTAAATTTGGCCGAAGGTGGACCAAAATC
GCAACACTACTTAAAAGTCGCACAGTTTTACAAGTGAAGAGTTATGCCAGACAGTACTTTAAAAATAAGG
TAAAGTGGGATGTGGAAAAAGAAACACCAACTCAGAAGAGCAGCAGTGATCTTCAGGTTAAAAACAAAGA
TGACAGGACGAAGGCGTGGGCAGCAGCCTGTTTAAGGGGAAGTGCTGATCCCTGCCTGAATGCTGTAAAG
ATTGAGAAGTTATCTGACGATGAAGATGTAGATATCACAGATGAGCTGGATGAGTTGACTTCTCAAACAT
CACAGAATTCTGGCAGCCATCTTACTTTAGATGTTCCTAATAGTAAAATGTATACCACCAATCAAGGAGA
ATTATGCCAAGAAGGTCCATTAGCTAAATCTTCAGGAGAGTCTCTTCAGAATGTGAAGCAAGGTGAAGGA
GAAGCATGTTCAAGCTCAGAAATTGCATCATGGGCTGAAAAACAGAAAAGTACTGACAAAAACTCAGCCG
AATTAAATGAGAAATACAATAAAGTGGTGGAAGAACACACTCTACACAGAGGAGAAGTAAGAGAGGAAGC
CAAGCACTCGCCTTCTCCAGAGCCCTGTGAGAGGCAGGACTCAAGTGGAAATGAAATGCTTTTGCCTCCT
TGCCAAATTGAGGAGGAAAACCATGAAGGAGAAGAGCTTAAGCCACCAGAACAAGAAGTTGAAATAGATA
GAAATGTCATTCAAGAAGAAGAAAAGCAAGCGATTCCTGAGTTTTTTGAGGGGCGCCAAACTAAAACACC
AGAACGCTATTTGAAAATTAGAAACTACATTTTGGATCAGTGGGAAATATGCAAACCGAAATACTTAAAT
AAGACCTCAGTACGTCCTGGCCTGAAGAACTGTGGGGATGTTAATTGTATTGGACGGATTCATACATACC
TCGAGTTGATAGGAGCAATCAATTTTGGATGTGAGCAGGCAGTATATAACAGGCCACAACCACTTGATAA
AGTACGAGCGGCCGACAGAAAGGATGCAGAAGCAGCATACCAGCTTGCCTGGCGCCTGCAGTCTATGCGA
ACGAGGAGACGCAGGGTCCGAGATCCATGGGGAAACTGGTGTGATGCAAAAGACTTAGAAGGACAAACAT
TTGAGCATTTGTCTGTGGAGGAGATGGCAAGAAGAAAAGAAGAGGAAAAGTGCAAACCTATTAAATTTTC
GAAAGCTTCAAAACTTCCAAAAAGCTCACTTGATCCTTTCCAACTGATACCTTGTAATTTTTTCAGTGAA
GAAAAGCAGGAGCCATTTCAGGTGAAAGTAGCTGCAGAAGCACTTTTAATAATGAATTTGCACGCCCACG
TGTCTATGGCAGAGGTGATTGGGCTTCTAGGAGGAAGATACTCAGAAGCTGATAAGGTCCTTGAAGTCTG
TGCAGCAGAACCATGTAACAGTCTGAGTACAGGACTTCAGTGTGAGATGGATCCTGTATCACAGACACAG
GCCTCAGAAACCTTGGCTCTTAGAGGCTACAGTGTCATTGGGTGGTACCATTCTCATCCTGCATTTGATC
CTAATCCATCTTTACGAGATATTGACACACAAGCCAAATACCAGAGTTACTTCTCCAGAGGAGGAGCAAA
ATTCATTGGAATGATTGTTAGTCCATATAATCGAAGTAATCCTTTACCATATTCCCAGATAACCTGCTTG
GTTATAAGTGAAGAAGTTAGCCCTGATGGTACCTACCGTTTACCTTACAAATTTGAAGTACAACAGATGT
TAGAAGAACCTCAGTGGGAATTAGTGTTTGAAAAGACAAGATGGATAATCGAAAAATACAGGCTTTCTAA
TAGCAGCGTCCCCATGGATAGAATCTTTCGCCGGGATTCCGACCTAACTTGTCTGCAGAAACTTTTGGAG
TGTCTAAGGAAAACACTGAGCAAAGTAGCCAATTGCTTCATCGCTGAGGAGTTCTTGACTCAAATAGAAA
ATCTGTTCCTTTCCAATTACAAAAGCAAGGAAGAGAATGGACTGGCAGAAGAGGATAGTACAAAGGAATT
GTTCATGTAA

Translation (819 aa):
MEAEEADVDVEGDVAAAAQPGNDESTASVFQDHYLDSTWRRENGCLPWTLDSTISDENRAIIEKMLLEEE
YYLSNKSLPGKFWVNQKEDNKKYTNSLQKSSKAMVDSPAKPASHSVKWTVEEKELFEQGLAKFGRRWTKI
ATLLKSRTVLQVKSYARQYFKNKVKWDVEKETPTQKSSSDLQVKNKDDRTKAWAAACLRGSADPCLNAVK
IEKLSDDEDVDITDELDELTSQTSQNSGSHLTLDVPNSKMYTTNQGELCQEGPLAKSSGESLQNVKQGEG
EACSSSEIASWAEKQKSTDKNSAELNEKYNKVVEEHTLHRGEVREEAKHSPSPEPCERQDSSGNEMLLPP
CQIEEENHEGEELKPPEQEVEIDRNVIQEEEKQAIPEFFEGRQTKTPERYLKIRNYILDQWEICKPKYLN
KTSVRPGLKNCGDVNCIGRIHTYLELIGAINFGCEQAVYNRPQPLDKVRAADRKDAEAAYQLAWRLQSMR
TRRRRVRDPWGNWCDAKDLEGQTFEHLSVEEMARRKEEEKCKPIKFSKASKLPKSSLDPFQLIPCNFFSE
EKQEPFQVKVAAEALLIMNLHAHVSMAEVIGLLGGRYSEADKVLEVCAAEPCNSLSTGLQCEMDPVSQTQ
ASETLALRGYSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPYNRSNPLPYSQITCL
VISEEVSPDGTYRLPYKFEVQQMLEEPQWELVFEKTRWIIEKYRLSNSSVPMDRIFRRDSDLTCLQKLLE
CLRKTLSKVANCFIAEEFLTQIENLFLSNYKSKEENGLAEEDSTKELFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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