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Report for CCDS938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
938.1 Public Homo sapiens 1 H2AC21 24 110 108 CCDS HistoryNCBI Gene:317772Re-query CCDS DB by CCDS ID:938.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 938.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331128.6 ENSP00000332790.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331128.6Link to Ensembl Protein Viewer:ENSP00000332790.4Re-query CCDS DB by Nucleotide ID:ENST00000331128Re-query CCDS DB by Protein ID:ENSP00000332790
Original member Current member NCBI NM_175065.3 NP_778235.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175065.3Link to Protein Sequence:NP_778235.1Re-query CCDS DB by Nucleotide ID:NM_175065Re-query CCDS DB by Protein ID:NP_778235Link to BLAST:NP_778235.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778235.1 130 Q8IUE6 130 100% 0 0

Chromosomal Locations for CCDS 938.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 149887524 149887916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGTCAGGACGCGGAAAGCAGGGAGGCAAGGCCCGCGCTAAGGCCAAGTCGCGCTCGTCCCGCGCTGGTC
TCCAGTTCCCGGTGGGGCGAGTGCACCGCTTGCTGCGCAAAGGCAACTACGCGGAGCGGGTCGGGGCAGG
CGCCCCGGTGTACCTGGCGGCGGTCCTCGAGTACCTGACCGCGGAAATTCTGGAGCTGGCGGGCAACGCG
GCTCGGGACAACAAGAAGACGCGCATCATCCCTCGCCATCTGCAACTAGCCGTGAGGAATGACGAAGAGC
TCAACAAGTTACTCGGGGGTGTCACCATTGCCCAGGGCGGCGTCTTGCCCAATATCCAGGCTGTCCTGTT
GCCCAAGAAAACGGAGAGTCACAAGCCTGGCAAGAACAAGTAA

Translation (130 aa):
MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNA
ARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTESHKPGKNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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